Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 HMGB1P50-201ENST00000605814 607 ntBASIC4.01□□□□□ -1.77
MSX2P35548 ATP5A1P2-202ENST00000616464 443 ntBASIC4.01□□□□□ -1.77
MSX2P35548 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC4.01□□□□□ -1.77
MSX2P35548 MARK2P15-201ENST00000432204 2186 ntBASIC4.01□□□□□ -1.77
MSX2P35548 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
MSX2P35548 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.01□□□□□ -1.77
MSX2P35548 DDX10P1-201ENST00000448545 1933 ntBASIC4.01□□□□□ -1.77
MSX2P35548 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4.01□□□□□ -1.77
MSX2P35548 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
MSX2P35548 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC4□□□□□ -1.77
MSX2P35548 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4□□□□□ -1.77
MSX2P35548 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC4□□□□□ -1.77
MSX2P35548 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
MSX2P35548 HSPA8P4-201ENST00000511877 1920 ntBASIC4□□□□□ -1.77
MSX2P35548 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC4□□□□□ -1.77
MSX2P35548 RNU6-1249P-201ENST00000363237 111 ntBASIC4□□□□□ -1.77
MSX2P35548 RNA5SP175-201ENST00000364275 119 ntBASIC4□□□□□ -1.77
MSX2P35548 RNU6-702P-201ENST00000364982 107 ntBASIC4□□□□□ -1.77
MSX2P35548 RNU6-434P-201ENST00000384376 107 ntBASIC4□□□□□ -1.77
MSX2P35548 NDUFS5P1-201ENST00000405668 289 ntBASIC4□□□□□ -1.77
MSX2P35548 Y_RNA.618-201ENST00000410949 107 ntBASIC4□□□□□ -1.77
MSX2P35548 RN7SKP58-201ENST00000411010 305 ntBASIC4□□□□□ -1.77
MSX2P35548 FAR2P2-201ENST00000413041 594 ntBASIC4□□□□□ -1.77
MSX2P35548 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC4□□□□□ -1.77
MSX2P35548 RPL7AP25-201ENST00000423357 805 ntBASIC4□□□□□ -1.77
MSX2P35548 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC4□□□□□ -1.77
MSX2P35548 FTH1P6-201ENST00000430768 320 ntBASIC4□□□□□ -1.77
MSX2P35548 RPL23AP69-201ENST00000431134 458 ntBASIC4□□□□□ -1.77
MSX2P35548 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4□□□□□ -1.77
MSX2P35548 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4□□□□□ -1.77
MSX2P35548 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC4□□□□□ -1.77
MSX2P35548 FABP5P13-201ENST00000452144 328 ntBASIC4□□□□□ -1.77
MSX2P35548 GSTA11P-201ENST00000452866 669 ntBASIC4□□□□□ -1.77
MSX2P35548 AC234775.1-201ENST00000454247 670 ntBASIC4□□□□□ -1.77
MSX2P35548 RPL23AP2-201ENST00000471227 466 ntBASIC4□□□□□ -1.77
MSX2P35548 RN7SL283P-201ENST00000489055 303 ntBASIC4□□□□□ -1.77
MSX2P35548 RN7SL812P-201ENST00000493791 279 ntBASIC4□□□□□ -1.77
MSX2P35548 RPL31P61-201ENST00000496160 376 ntBASIC4□□□□□ -1.77
MSX2P35548 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC4□□□□□ -1.77
MSX2P35548 Y_RNA.661-201ENST00000516003 99 ntBASIC4□□□□□ -1.77
MSX2P35548 RNU6-1332P-201ENST00000516666 104 ntBASIC4□□□□□ -1.77
MSX2P35548 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC4□□□□□ -1.77
MSX2P35548 AP006587.4-201ENST00000526053 529 ntBASIC4□□□□□ -1.77
MSX2P35548 APAF1-207ENST00000547743 651 ntTSL 3 BASIC4□□□□□ -1.77
MSX2P35548 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC4□□□□□ -1.77
MSX2P35548 AL161670.1-201ENST00000554348 137 ntBASIC4□□□□□ -1.77
MSX2P35548 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC4□□□□□ -1.77
MSX2P35548 AC020914.4-201ENST00000597690 277 ntBASIC4□□□□□ -1.77
MSX2P35548 SNRPGP15-201ENST00000600149 222 ntBASIC4□□□□□ -1.77
MSX2P35548 AC011373.1-201ENST00000607270 237 ntBASIC4□□□□□ -1.77
MSX2P35548 AC006157.1-201ENST00000611750 366 ntBASIC4□□□□□ -1.77
MSX2P35548 PISRT1.1-201ENST00000616930 107 ntBASIC4□□□□□ -1.77
MSX2P35548 AL731566.2-201ENST00000618971 317 ntBASIC4□□□□□ -1.77
MSX2P35548 MIR6130-201ENST00000619419 109 ntBASIC4□□□□□ -1.77
MSX2P35548 AC007998.5-201ENST00000622938 237 ntBASIC4□□□□□ -1.77
MSX2P35548 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4□□□□□ -1.77
MSX2P35548 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC4□□□□□ -1.77
MSX2P35548 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC4□□□□□ -1.77
MSX2P35548 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4□□□□□ -1.77
MSX2P35548 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
MSX2P35548 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
MSX2P35548 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC4□□□□□ -1.77
MSX2P35548 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
MSX2P35548 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC3.99□□□□□ -1.77
MSX2P35548 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC3.99□□□□□ -1.77
MSX2P35548 FAM35DP-201ENST00000323387 2712 ntBASIC3.99□□□□□ -1.77
MSX2P35548 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
MSX2P35548 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
MSX2P35548 MIR331-201ENST00000362302 94 ntBASIC3.99□□□□□ -1.77
MSX2P35548 Y_RNA.80-201ENST00000362996 102 ntBASIC3.99□□□□□ -1.77
MSX2P35548 RNA5-8SP7-201ENST00000363443 155 ntBASIC3.99□□□□□ -1.77
MSX2P35548 RNU6-26P-201ENST00000383985 107 ntBASIC3.99□□□□□ -1.77
MSX2P35548 RNU6-95P-201ENST00000384697 107 ntBASIC3.99□□□□□ -1.77
MSX2P35548 MIR135A2-201ENST00000384854 100 ntBASIC3.99□□□□□ -1.77
MSX2P35548 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
MSX2P35548 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC3.99□□□□□ -1.77
MSX2P35548 RPL21P109-201ENST00000422213 475 ntBASIC3.99□□□□□ -1.77
MSX2P35548 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC3.99□□□□□ -1.77
MSX2P35548 AC011742.1-201ENST00000431448 434 ntBASIC3.99□□□□□ -1.77
MSX2P35548 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC3.99□□□□□ -1.77
MSX2P35548 AC236972.1-201ENST00000433225 199 ntBASIC3.99□□□□□ -1.77
MSX2P35548 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC3.99□□□□□ -1.77
MSX2P35548 AC092324.1-201ENST00000468671 324 ntBASIC3.99□□□□□ -1.77
MSX2P35548 AC128713.1-201ENST00000471495 306 ntBASIC3.99□□□□□ -1.77
MSX2P35548 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC3.99□□□□□ -1.77
MSX2P35548 AC069499.1-201ENST00000489433 509 ntBASIC3.99□□□□□ -1.77
MSX2P35548 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC3.99□□□□□ -1.77
MSX2P35548 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC3.99□□□□□ -1.77
MSX2P35548 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.99□□□□□ -1.77
MSX2P35548 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
MSX2P35548 RNU6-699P-201ENST00000517081 110 ntBASIC3.99□□□□□ -1.77
MSX2P35548 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
MSX2P35548 AC103783.1-201ENST00000520506 373 ntBASIC3.99□□□□□ -1.77
MSX2P35548 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC3.99□□□□□ -1.77
MSX2P35548 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.99□□□□□ -1.77
MSX2P35548 AC107016.1-201ENST00000550463 337 ntBASIC3.99□□□□□ -1.77
MSX2P35548 AC067852.3-201ENST00000589177 561 ntBASIC3.99□□□□□ -1.77
MSX2P35548 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC3.99□□□□□ -1.77
MSX2P35548 AL034351.1-201ENST00000605288 668 ntBASIC3.99□□□□□ -1.77
MSX2P35548 AL442067.1-201ENST00000613261 223 ntBASIC3.99□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms