Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 RN7SKP202-201ENST00000410439 330 ntBASIC4.16□□□□□ -1.74
HMGB1P09429 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC4.16□□□□□ -1.74
HMGB1P09429 PTGES3P4-201ENST00000426243 356 ntBASIC4.16□□□□□ -1.74
HMGB1P09429 MED13P1-201ENST00000428342 171 ntBASIC4.16□□□□□ -1.74
HMGB1P09429 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC4.16□□□□□ -1.74
HMGB1P09429 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC4.16□□□□□ -1.74
HMGB1P09429 AL445584.1-201ENST00000431451 330 ntBASIC4.16□□□□□ -1.74
HMGB1P09429 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC4.16□□□□□ -1.74
HMGB1P09429 AL078601.1-201ENST00000444542 271 ntBASIC4.16□□□□□ -1.74
HMGB1P09429 AC073387.1-201ENST00000453261 709 ntBASIC4.16□□□□□ -1.74
HMGB1P09429 BTF3P15-201ENST00000455606 336 ntBASIC4.16□□□□□ -1.74
HMGB1P09429 FCF1P3-201ENST00000496394 590 ntBASIC4.16□□□□□ -1.74
HMGB1P09429 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC4.16□□□□□ -1.74
HMGB1P09429 RNU6-123P-201ENST00000516163 102 ntBASIC4.16□□□□□ -1.74
HMGB1P09429 RNU1-95P-201ENST00000516357 160 ntBASIC4.16□□□□□ -1.74
HMGB1P09429 RNU1-128P-201ENST00000516704 160 ntBASIC4.16□□□□□ -1.74
HMGB1P09429 SNORA70.19-201ENST00000516717 90 ntBASIC4.16□□□□□ -1.74
HMGB1P09429 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC4.16□□□□□ -1.74
HMGB1P09429 OSBPL9P5-201ENST00000542581 171 ntBASIC4.16□□□□□ -1.74
HMGB1P09429 MEG8-215ENST00000555354 469 ntTSL 3 BASIC4.16□□□□□ -1.74
HMGB1P09429 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC4.16□□□□□ -1.74
HMGB1P09429 MIR3199-1-201ENST00000582434 88 ntBASIC4.16□□□□□ -1.74
HMGB1P09429 AC078899.3-201ENST00000599065 212 ntBASIC4.16□□□□□ -1.74
HMGB1P09429 SEPT7P9-203ENST00000604116 343 ntBASIC4.16□□□□□ -1.74
HMGB1P09429 AL121772.2-201ENST00000614331 297 ntBASIC4.16□□□□□ -1.74
HMGB1P09429 AL731566.2-201ENST00000618971 317 ntBASIC4.16□□□□□ -1.74
HMGB1P09429 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
HMGB1P09429 MFSD8-236ENST00000641509 4050 ntBASIC4.16□□□□□ -1.74
HMGB1P09429 TEX21P-201ENST00000447107 1476 ntBASIC4.16□□□□□ -1.74
HMGB1P09429 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC4.16□□□□□ -1.74
HMGB1P09429 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
HMGB1P09429 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC4.16□□□□□ -1.74
HMGB1P09429 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.74
HMGB1P09429 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
HMGB1P09429 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
HMGB1P09429 PWAR6-201ENST00000552334 4618 ntBASIC4.15□□□□□ -1.74
HMGB1P09429 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC4.15□□□□□ -1.75
HMGB1P09429 RPL36AP6-201ENST00000435770 321 ntBASIC4.15□□□□□ -1.75
HMGB1P09429 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC4.15□□□□□ -1.75
HMGB1P09429 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC4.15□□□□□ -1.75
HMGB1P09429 AC073614.1-201ENST00000438690 650 ntBASIC4.15□□□□□ -1.75
HMGB1P09429 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC4.15□□□□□ -1.75
HMGB1P09429 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC4.15□□□□□ -1.75
HMGB1P09429 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC4.15□□□□□ -1.75
HMGB1P09429 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC4.15□□□□□ -1.75
HMGB1P09429 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC4.15□□□□□ -1.75
HMGB1P09429 AC008088.1-201ENST00000580993 280 ntBASIC4.15□□□□□ -1.75
HMGB1P09429 AL356280.1-201ENST00000603614 379 ntBASIC4.15□□□□□ -1.75
HMGB1P09429 AL645944.1-201ENST00000603857 493 ntBASIC4.15□□□□□ -1.75
HMGB1P09429 AC012409.4-201ENST00000612923 249 ntBASIC4.15□□□□□ -1.75
HMGB1P09429 AP001506.1-201ENST00000615444 211 ntBASIC4.15□□□□□ -1.75
HMGB1P09429 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC4.15□□□□□ -1.75
HMGB1P09429 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC4.15□□□□□ -1.75
HMGB1P09429 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC4.14□□□□□ -1.75
HMGB1P09429 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC4.14□□□□□ -1.75
HMGB1P09429 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
HMGB1P09429 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
HMGB1P09429 FGF7P2-201ENST00000332473 296 ntBASIC4.14□□□□□ -1.75
HMGB1P09429 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
HMGB1P09429 RNU6-395P-201ENST00000365662 106 ntBASIC4.14□□□□□ -1.75
HMGB1P09429 Z98749.2-208ENST00000381646 500 ntBASIC4.14□□□□□ -1.75
HMGB1P09429 SNORA24.1-201ENST00000384401 135 ntBASIC4.14□□□□□ -1.75
HMGB1P09429 CISD1P1-201ENST00000393907 327 ntBASIC4.14□□□□□ -1.75
HMGB1P09429 RN7SKP111-201ENST00000410349 271 ntBASIC4.14□□□□□ -1.75
HMGB1P09429 AC009518.2-201ENST00000418056 731 ntBASIC4.14□□□□□ -1.75
HMGB1P09429 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC4.14□□□□□ -1.75
HMGB1P09429 AP000907.1-201ENST00000428428 510 ntBASIC4.14□□□□□ -1.75
HMGB1P09429 Z98742.2-201ENST00000431564 187 ntBASIC4.14□□□□□ -1.75
HMGB1P09429 AL022238.1-201ENST00000442557 355 ntBASIC4.14□□□□□ -1.75
HMGB1P09429 COX6CP2-201ENST00000444980 225 ntBASIC4.14□□□□□ -1.75
HMGB1P09429 AL136380.1-201ENST00000447970 162 ntBASIC4.14□□□□□ -1.75
HMGB1P09429 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC4.14□□□□□ -1.75
HMGB1P09429 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC4.14□□□□□ -1.75
HMGB1P09429 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC4.14□□□□□ -1.75
HMGB1P09429 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC4.14□□□□□ -1.75
HMGB1P09429 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
HMGB1P09429 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC4.14□□□□□ -1.75
HMGB1P09429 AC012414.6-201ENST00000568241 401 ntBASIC4.14□□□□□ -1.75
HMGB1P09429 MIR4425-201ENST00000580572 84 ntBASIC4.14□□□□□ -1.75
HMGB1P09429 AC121247.2-201ENST00000604776 136 ntBASIC4.14□□□□□ -1.75
HMGB1P09429 AL139286.2-201ENST00000606838 396 ntBASIC4.14□□□□□ -1.75
HMGB1P09429 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC4.14□□□□□ -1.75
HMGB1P09429 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
HMGB1P09429 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
HMGB1P09429 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
HMGB1P09429 RNU1-109P-201ENST00000383960 147 ntBASIC4.13□□□□□ -1.75
HMGB1P09429 SNORA5A-201ENST00000384111 134 ntBASIC4.13□□□□□ -1.75
HMGB1P09429 RNA5SP111-201ENST00000411386 101 ntBASIC4.13□□□□□ -1.75
HMGB1P09429 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC4.13□□□□□ -1.75
HMGB1P09429 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC4.13□□□□□ -1.75
HMGB1P09429 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC4.13□□□□□ -1.75
HMGB1P09429 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC4.13□□□□□ -1.75
HMGB1P09429 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
HMGB1P09429 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC4.13□□□□□ -1.75
HMGB1P09429 GAPDHP17-201ENST00000449858 1001 ntBASIC4.13□□□□□ -1.75
HMGB1P09429 MRPS31P2-201ENST00000451581 518 ntBASIC4.13□□□□□ -1.75
HMGB1P09429 AC146507.2-201ENST00000460608 476 ntBASIC4.13□□□□□ -1.75
HMGB1P09429 RPL23AP67-201ENST00000465341 474 ntBASIC4.13□□□□□ -1.75
HMGB1P09429 AC023141.11-201ENST00000508864 202 ntBASIC4.13□□□□□ -1.75
HMGB1P09429 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC4.13□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 115 ms