Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 U6.105-201ENST00000637379 88 ntBASIC2.64□□□□□ -1.99
FOXA2Q9Y261 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC2.64□□□□□ -1.99
FOXA2Q9Y261 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.64□□□□□ -1.99
FOXA2Q9Y261 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC2.64□□□□□ -1.99
FOXA2Q9Y261 MTND4P35-201ENST00000604257 1375 ntBASIC2.63□□□□□ -1.99
FOXA2Q9Y261 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
FOXA2Q9Y261 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC2.63□□□□□ -1.99
FOXA2Q9Y261 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
FOXA2Q9Y261 SNORA71.3-201ENST00000362582 128 ntBASIC2.63□□□□□ -1.99
FOXA2Q9Y261 RNU1-70P-201ENST00000362618 164 ntBASIC2.63□□□□□ -1.99
FOXA2Q9Y261 SNORD56.2-201ENST00000363242 71 ntBASIC2.63□□□□□ -1.99
FOXA2Q9Y261 RNU6-960P-201ENST00000364056 120 ntBASIC2.63□□□□□ -1.99
FOXA2Q9Y261 RNU6-188P-201ENST00000364207 107 ntBASIC2.63□□□□□ -1.99
FOXA2Q9Y261 RNU6-946P-201ENST00000383878 107 ntBASIC2.63□□□□□ -1.99
FOXA2Q9Y261 RNU6-190P-201ENST00000384154 102 ntBASIC2.63□□□□□ -1.99
FOXA2Q9Y261 MIR490-201ENST00000384865 128 ntBASIC2.63□□□□□ -1.99
FOXA2Q9Y261 MIR183-201ENST00000384958 110 ntBASIC2.63□□□□□ -1.99
FOXA2Q9Y261 SNORA11-201ENST00000408789 128 ntBASIC2.63□□□□□ -1.99
FOXA2Q9Y261 RNU2-8P-201ENST00000410727 190 ntBASIC2.63□□□□□ -1.99
FOXA2Q9Y261 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC2.63□□□□□ -1.99
FOXA2Q9Y261 AL589872.1-201ENST00000426602 288 ntBASIC2.63□□□□□ -1.99
FOXA2Q9Y261 OR2AS1P-201ENST00000427827 319 ntBASIC2.63□□□□□ -1.99
FOXA2Q9Y261 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC2.63□□□□□ -1.99
FOXA2Q9Y261 MTATP6P7-201ENST00000453315 681 ntBASIC2.63□□□□□ -1.99
FOXA2Q9Y261 RPS15AP34-201ENST00000487776 387 ntBASIC2.63□□□□□ -1.99
FOXA2Q9Y261 AC139453.3-201ENST00000493276 369 ntBASIC2.63□□□□□ -1.99
FOXA2Q9Y261 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC2.63□□□□□ -1.99
FOXA2Q9Y261 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
FOXA2Q9Y261 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC2.63□□□□□ -1.99
FOXA2Q9Y261 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC2.63□□□□□ -1.99
FOXA2Q9Y261 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC2.63□□□□□ -1.99
FOXA2Q9Y261 Y_RNA.672-201ENST00000516289 104 ntBASIC2.63□□□□□ -1.99
FOXA2Q9Y261 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC2.63□□□□□ -1.99
FOXA2Q9Y261 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC2.63□□□□□ -1.99
FOXA2Q9Y261 DUXAP5-201ENST00000529668 529 ntBASIC2.63□□□□□ -1.99
FOXA2Q9Y261 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC2.63□□□□□ -1.99
FOXA2Q9Y261 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC2.63□□□□□ -1.99
FOXA2Q9Y261 RPL21P5-201ENST00000554662 472 ntBASIC2.63□□□□□ -1.99
FOXA2Q9Y261 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC2.63□□□□□ -1.99
FOXA2Q9Y261 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC2.63□□□□□ -1.99
FOXA2Q9Y261 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC2.63□□□□□ -1.99
FOXA2Q9Y261 OR1M4P-201ENST00000589199 287 ntBASIC2.63□□□□□ -1.99
FOXA2Q9Y261 HMGN1P30-201ENST00000589286 268 ntBASIC2.63□□□□□ -1.99
FOXA2Q9Y261 BNIP3P8-201ENST00000597863 560 ntBASIC2.63□□□□□ -1.99
FOXA2Q9Y261 AC012065.4-201ENST00000602445 679 ntBASIC2.63□□□□□ -1.99
FOXA2Q9Y261 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC2.63□□□□□ -1.99
FOXA2Q9Y261 AL591516.1-201ENST00000611326 274 ntBASIC2.63□□□□□ -1.99
FOXA2Q9Y261 AL157817.1-201ENST00000614264 790 ntBASIC2.63□□□□□ -1.99
FOXA2Q9Y261 AC091903.1-201ENST00000624322 454 ntBASIC2.63□□□□□ -1.99
FOXA2Q9Y261 U6.99-201ENST00000637524 83 ntBASIC2.63□□□□□ -1.99
FOXA2Q9Y261 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.63□□□□□ -1.99
FOXA2Q9Y261 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
FOXA2Q9Y261 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
FOXA2Q9Y261 AC010889.1-201ENST00000566193 2666 ntBASIC2.63□□□□□ -1.99
FOXA2Q9Y261 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC2.63□□□□□ -1.99
FOXA2Q9Y261 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC2.62□□□□□ -1.99
FOXA2Q9Y261 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
FOXA2Q9Y261 NACAP2-201ENST00000318548 624 ntBASIC2.62□□□□□ -1.99
FOXA2Q9Y261 AC073343.1-201ENST00000328239 651 ntBASIC2.62□□□□□ -1.99
FOXA2Q9Y261 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC2.62□□□□□ -1.99
FOXA2Q9Y261 MIR301A-201ENST00000385261 86 ntBASIC2.62□□□□□ -1.99
FOXA2Q9Y261 U3.19-201ENST00000390893 196 ntBASIC2.62□□□□□ -1.99
FOXA2Q9Y261 AL049545.1-201ENST00000401856 572 ntBASIC2.62□□□□□ -1.99
FOXA2Q9Y261 BX323014.1-201ENST00000412876 237 ntBASIC2.62□□□□□ -1.99
FOXA2Q9Y261 AC107081.1-201ENST00000414975 361 ntBASIC2.62□□□□□ -1.99
FOXA2Q9Y261 AC007283.2-201ENST00000424739 197 ntBASIC2.62□□□□□ -1.99
FOXA2Q9Y261 AC092447.3-201ENST00000426027 686 ntBASIC2.62□□□□□ -1.99
FOXA2Q9Y261 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC2.62□□□□□ -1.99
FOXA2Q9Y261 OSTCP8-201ENST00000445117 448 ntBASIC2.62□□□□□ -1.99
FOXA2Q9Y261 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC2.62□□□□□ -1.99
FOXA2Q9Y261 AC098862.1-201ENST00000504991 413 ntBASIC2.62□□□□□ -1.99
FOXA2Q9Y261 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC2.62□□□□□ -1.99
FOXA2Q9Y261 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC2.62□□□□□ -1.99
FOXA2Q9Y261 HMGB1P41-201ENST00000520234 440 ntBASIC2.62□□□□□ -1.99
FOXA2Q9Y261 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC2.62□□□□□ -1.99
FOXA2Q9Y261 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC2.62□□□□□ -1.99
FOXA2Q9Y261 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.62□□□□□ -1.99
FOXA2Q9Y261 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC2.62□□□□□ -1.99
FOXA2Q9Y261 AF131215.7-201ENST00000602443 707 ntBASIC2.62□□□□□ -1.99
FOXA2Q9Y261 AC026790.2-201ENST00000606282 430 ntBASIC2.62□□□□□ -1.99
FOXA2Q9Y261 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC2.62□□□□□ -1.99
FOXA2Q9Y261 AC022893.3-201ENST00000607665 437 ntBASIC2.62□□□□□ -1.99
FOXA2Q9Y261 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC2.62□□□□□ -1.99
FOXA2Q9Y261 AC130324.3-201ENST00000614165 542 ntBASIC2.62□□□□□ -1.99
FOXA2Q9Y261 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC2.62□□□□□ -1.99
FOXA2Q9Y261 MIR7515-201ENST00000637837 67 ntBASIC2.62□□□□□ -1.99
FOXA2Q9Y261 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
FOXA2Q9Y261 AC004972.1-201ENST00000623934 2209 ntBASIC2.62□□□□□ -1.99
FOXA2Q9Y261 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
FOXA2Q9Y261 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.61□□□□□ -1.99
FOXA2Q9Y261 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC2.61□□□□□ -1.99
FOXA2Q9Y261 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
FOXA2Q9Y261 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC2.61□□□□□ -1.99
FOXA2Q9Y261 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.61□□□□□ -1.99
FOXA2Q9Y261 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC2.61□□□□□ -1.99
FOXA2Q9Y261 MIR148B-201ENST00000362252 99 ntBASIC2.61□□□□□ -1.99
FOXA2Q9Y261 RNU5E-1-201ENST00000362477 120 ntBASIC2.61□□□□□ -1.99
FOXA2Q9Y261 U3.6-201ENST00000363622 211 ntBASIC2.61□□□□□ -1.99
FOXA2Q9Y261 RNY1P12-201ENST00000364251 105 ntBASIC2.61□□□□□ -1.99
FOXA2Q9Y261 SNORA68.1-201ENST00000364537 132 ntBASIC2.61□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms