Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AP000873.1-201ENST00000463987 400 ntBASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 AC103987.1-201ENST00000473394 348 ntBASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 RPL23AP11-201ENST00000475260 469 ntBASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 AC108860.1-201ENST00000484521 383 ntBASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 AC091885.1-201ENST00000506658 268 ntBASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 AC005921.1-201ENST00000510589 286 ntBASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 NDUFB4P9-201ENST00000511646 388 ntBASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 SNORA70.14-201ENST00000516205 110 ntBASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 SNORA70.19-201ENST00000516717 90 ntBASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 SNRPGP16-201ENST00000533275 226 ntBASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 AL355836.1-201ENST00000555951 870 ntBASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 AL138976.2-201ENST00000563989 694 ntBASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 MIR3921-201ENST00000577308 85 ntBASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 MIR4703-201ENST00000577728 79 ntBASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 AC104763.2-201ENST00000604179 382 ntBASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 AC008945.2-201ENST00000606056 604 ntBASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 AL365204.3-201ENST00000612448 685 ntBASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 AL355810.1-201ENST00000614629 552 ntBASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 AC011155.2-201ENST00000623202 216 ntBASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 MFSD8-233ENST00000641482 4860 ntBASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 PRO1804-201ENST00000623780 2050 ntBASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC4.14□□□□□ -1.75
LIMCH1Q9UPQ0 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
LIMCH1Q9UPQ0 PWAR6-201ENST00000552334 4618 ntBASIC4.13□□□□□ -1.75
LIMCH1Q9UPQ0 AC066616.2-201ENST00000559334 1481 ntBASIC4.13□□□□□ -1.75
LIMCH1Q9UPQ0 CBX3P1-201ENST00000325243 554 ntBASIC4.13□□□□□ -1.75
LIMCH1Q9UPQ0 FRG1CP-201ENST00000358464 769 ntBASIC4.13□□□□□ -1.75
LIMCH1Q9UPQ0 SNORA51.2-201ENST00000364595 132 ntBASIC4.13□□□□□ -1.75
LIMCH1Q9UPQ0 MIR1290-201ENST00000408735 78 ntBASIC4.13□□□□□ -1.75
LIMCH1Q9UPQ0 ATP5A1P2-201ENST00000412323 255 ntBASIC4.13□□□□□ -1.75
LIMCH1Q9UPQ0 OR6C66P-201ENST00000414917 930 ntBASIC4.13□□□□□ -1.75
LIMCH1Q9UPQ0 RPL17P36-201ENST00000420302 549 ntBASIC4.13□□□□□ -1.75
LIMCH1Q9UPQ0 RPL7P2-201ENST00000427639 268 ntBASIC4.13□□□□□ -1.75
LIMCH1Q9UPQ0 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC4.13□□□□□ -1.75
LIMCH1Q9UPQ0 RPL36AP53-201ENST00000432891 316 ntBASIC4.13□□□□□ -1.75
LIMCH1Q9UPQ0 NEFMP1-201ENST00000443423 1006 ntBASIC4.13□□□□□ -1.75
LIMCH1Q9UPQ0 HMGN2P7-201ENST00000456186 273 ntBASIC4.13□□□□□ -1.75
LIMCH1Q9UPQ0 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC4.13□□□□□ -1.75
LIMCH1Q9UPQ0 AC046134.1-201ENST00000514454 666 ntBASIC4.13□□□□□ -1.75
LIMCH1Q9UPQ0 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC4.13□□□□□ -1.75
LIMCH1Q9UPQ0 RNU4-29P-201ENST00000515943 174 ntBASIC4.13□□□□□ -1.75
LIMCH1Q9UPQ0 SNORA70.18-201ENST00000516696 98 ntBASIC4.13□□□□□ -1.75
LIMCH1Q9UPQ0 AP006587.4-201ENST00000526053 529 ntBASIC4.13□□□□□ -1.75
LIMCH1Q9UPQ0 AP005435.4-201ENST00000529514 284 ntBASIC4.13□□□□□ -1.75
LIMCH1Q9UPQ0 AC103843.2-201ENST00000530523 682 ntBASIC4.13□□□□□ -1.75
LIMCH1Q9UPQ0 AC011602.1-201ENST00000546484 331 ntBASIC4.13□□□□□ -1.75
LIMCH1Q9UPQ0 BNIP3P6-201ENST00000549284 499 ntBASIC4.13□□□□□ -1.75
LIMCH1Q9UPQ0 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC4.13□□□□□ -1.75
LIMCH1Q9UPQ0 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC4.13□□□□□ -1.75
LIMCH1Q9UPQ0 AL035413.2-201ENST00000604801 525 ntBASIC4.13□□□□□ -1.75
LIMCH1Q9UPQ0 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC4.13□□□□□ -1.75
LIMCH1Q9UPQ0 OTUD4P1-201ENST00000237841 3067 ntBASIC4.13□□□□□ -1.75
LIMCH1Q9UPQ0 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
LIMCH1Q9UPQ0 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
LIMCH1Q9UPQ0 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC4.13□□□□□ -1.75
LIMCH1Q9UPQ0 OR4G1P-203ENST00000641984 1631 ntBASIC4.13□□□□□ -1.75
LIMCH1Q9UPQ0 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
LIMCH1Q9UPQ0 PTER-201ENST00000298942 3448 ntTSL 5 BASIC4.12□□□□□ -1.75
LIMCH1Q9UPQ0 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC4.12□□□□□ -1.75
LIMCH1Q9UPQ0 RNU6-552P-201ENST00000362869 119 ntBASIC4.12□□□□□ -1.75
LIMCH1Q9UPQ0 RN7SKP227-201ENST00000364445 330 ntBASIC4.12□□□□□ -1.75
LIMCH1Q9UPQ0 RNA5SP189-201ENST00000364920 115 ntBASIC4.12□□□□□ -1.75
LIMCH1Q9UPQ0 RNA5SP167-201ENST00000365461 116 ntBASIC4.12□□□□□ -1.75
LIMCH1Q9UPQ0 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
LIMCH1Q9UPQ0 AP002088.1-201ENST00000382740 395 ntBASIC4.12□□□□□ -1.75
LIMCH1Q9UPQ0 RNU4-46P-201ENST00000410818 138 ntBASIC4.12□□□□□ -1.75
LIMCH1Q9UPQ0 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC4.12□□□□□ -1.75
LIMCH1Q9UPQ0 AC018630.2-202ENST00000422992 927 ntBASIC4.12□□□□□ -1.75
LIMCH1Q9UPQ0 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC4.12□□□□□ -1.75
LIMCH1Q9UPQ0 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC4.12□□□□□ -1.75
LIMCH1Q9UPQ0 SRIP2-201ENST00000428470 166 ntBASIC4.12□□□□□ -1.75
LIMCH1Q9UPQ0 AL121601.2-201ENST00000438019 707 ntBASIC4.12□□□□□ -1.75
LIMCH1Q9UPQ0 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC4.12□□□□□ -1.75
LIMCH1Q9UPQ0 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC4.12□□□□□ -1.75
LIMCH1Q9UPQ0 RNU6-953P-201ENST00000459154 107 ntBASIC4.12□□□□□ -1.75
LIMCH1Q9UPQ0 AC010401.1-201ENST00000463867 348 ntBASIC4.12□□□□□ -1.75
LIMCH1Q9UPQ0 FTH1P2-201ENST00000466086 412 ntBASIC4.12□□□□□ -1.75
LIMCH1Q9UPQ0 AC021205.2-201ENST00000480069 347 ntBASIC4.12□□□□□ -1.75
LIMCH1Q9UPQ0 AC092451.1-201ENST00000480211 153 ntBASIC4.12□□□□□ -1.75
LIMCH1Q9UPQ0 RPL31P13-201ENST00000484151 370 ntBASIC4.12□□□□□ -1.75
LIMCH1Q9UPQ0 EIF4EP3-201ENST00000498782 656 ntBASIC4.12□□□□□ -1.75
LIMCH1Q9UPQ0 AC092436.1-201ENST00000506450 503 ntBASIC4.12□□□□□ -1.75
LIMCH1Q9UPQ0 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
LIMCH1Q9UPQ0 AC104806.1-201ENST00000508720 308 ntBASIC4.12□□□□□ -1.75
LIMCH1Q9UPQ0 AC098799.2-201ENST00000509466 868 ntBASIC4.12□□□□□ -1.75
LIMCH1Q9UPQ0 LRRC34P2-201ENST00000514850 553 ntBASIC4.12□□□□□ -1.75
LIMCH1Q9UPQ0 MIR2276-201ENST00000516886 89 ntBASIC4.12□□□□□ -1.75
LIMCH1Q9UPQ0 RNU6-1231P-201ENST00000517185 103 ntBASIC4.12□□□□□ -1.75
LIMCH1Q9UPQ0 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC4.12□□□□□ -1.75
LIMCH1Q9UPQ0 SUB1P1-201ENST00000524415 382 ntBASIC4.12□□□□□ -1.75
LIMCH1Q9UPQ0 RANP3-201ENST00000530970 276 ntBASIC4.12□□□□□ -1.75
LIMCH1Q9UPQ0 UBE2V2P2-201ENST00000587677 504 ntBASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms