Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 AC087783.2-201ENST00000605070 562 ntBASIC4.86□□□□□ -1.63
TRIM56Q9BRZ2 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.86□□□□□ -1.63
TRIM56Q9BRZ2 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
TRIM56Q9BRZ2 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC4.86□□□□□ -1.63
TRIM56Q9BRZ2 SAMMSON-226ENST00000642089 1582 ntBASIC4.86□□□□□ -1.63
TRIM56Q9BRZ2 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
TRIM56Q9BRZ2 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
TRIM56Q9BRZ2 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
TRIM56Q9BRZ2 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
TRIM56Q9BRZ2 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.85□□□□□ -1.63
TRIM56Q9BRZ2 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
TRIM56Q9BRZ2 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
TRIM56Q9BRZ2 RN7SKP95-201ENST00000362860 303 ntBASIC4.85□□□□□ -1.63
TRIM56Q9BRZ2 RNY1P16-201ENST00000363063 111 ntBASIC4.85□□□□□ -1.63
TRIM56Q9BRZ2 RNU1-83P-201ENST00000363426 164 ntBASIC4.85□□□□□ -1.63
TRIM56Q9BRZ2 RNU4-50P-201ENST00000364361 141 ntBASIC4.85□□□□□ -1.63
TRIM56Q9BRZ2 RNU6-335P-201ENST00000364563 113 ntBASIC4.85□□□□□ -1.63
TRIM56Q9BRZ2 SNORD73A-201ENST00000386062 65 ntBASIC4.85□□□□□ -1.63
TRIM56Q9BRZ2 MIR1290-201ENST00000408735 78 ntBASIC4.85□□□□□ -1.63
TRIM56Q9BRZ2 RNU6-607P-201ENST00000411283 108 ntBASIC4.85□□□□□ -1.63
TRIM56Q9BRZ2 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC4.85□□□□□ -1.63
TRIM56Q9BRZ2 AC004938.1-201ENST00000438468 308 ntBASIC4.85□□□□□ -1.63
TRIM56Q9BRZ2 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC4.85□□□□□ -1.63
TRIM56Q9BRZ2 snoU13.20-201ENST00000459180 104 ntBASIC4.85□□□□□ -1.63
TRIM56Q9BRZ2 AC108751.2-201ENST00000469993 231 ntBASIC4.85□□□□□ -1.63
TRIM56Q9BRZ2 RNU6-1023P-201ENST00000516137 106 ntBASIC4.85□□□□□ -1.63
TRIM56Q9BRZ2 SNORA40.15-201ENST00000516884 107 ntBASIC4.85□□□□□ -1.63
TRIM56Q9BRZ2 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC4.85□□□□□ -1.63
TRIM56Q9BRZ2 AC144568.1-201ENST00000520139 137 ntBASIC4.85□□□□□ -1.63
TRIM56Q9BRZ2 ATP5F1P5-201ENST00000526403 760 ntBASIC4.85□□□□□ -1.63
TRIM56Q9BRZ2 HSPE1P20-201ENST00000538133 289 ntBASIC4.85□□□□□ -1.63
TRIM56Q9BRZ2 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC4.85□□□□□ -1.63
TRIM56Q9BRZ2 AC006600.1-201ENST00000572529 153 ntBASIC4.85□□□□□ -1.63
TRIM56Q9BRZ2 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
TRIM56Q9BRZ2 FAM60BP-201ENST00000578364 658 ntBASIC4.85□□□□□ -1.63
TRIM56Q9BRZ2 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.85□□□□□ -1.63
TRIM56Q9BRZ2 SNORA74C-1-201ENST00000580726 201 ntBASIC4.85□□□□□ -1.63
TRIM56Q9BRZ2 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC4.85□□□□□ -1.63
TRIM56Q9BRZ2 VN1R91P-201ENST00000594377 169 ntBASIC4.85□□□□□ -1.63
TRIM56Q9BRZ2 HMGB1P50-201ENST00000605814 607 ntBASIC4.85□□□□□ -1.63
TRIM56Q9BRZ2 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
TRIM56Q9BRZ2 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
TRIM56Q9BRZ2 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
TRIM56Q9BRZ2 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC4.85□□□□□ -1.63
TRIM56Q9BRZ2 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
TRIM56Q9BRZ2 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
TRIM56Q9BRZ2 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
TRIM56Q9BRZ2 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
TRIM56Q9BRZ2 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
TRIM56Q9BRZ2 RN7SKP104-201ENST00000362605 328 ntBASIC4.84□□□□□ -1.63
TRIM56Q9BRZ2 SNORA20.1-201ENST00000364790 130 ntBASIC4.84□□□□□ -1.63
TRIM56Q9BRZ2 RNA5SP235-201ENST00000365411 114 ntBASIC4.84□□□□□ -1.63
TRIM56Q9BRZ2 SNORA56-201ENST00000383966 129 ntBASIC4.84□□□□□ -1.63
TRIM56Q9BRZ2 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
TRIM56Q9BRZ2 AC063979.1-201ENST00000415539 377 ntBASIC4.84□□□□□ -1.63
TRIM56Q9BRZ2 AL360271.2-201ENST00000447710 161 ntBASIC4.84□□□□□ -1.63
TRIM56Q9BRZ2 CHEK2P4-201ENST00000450340 246 ntBASIC4.84□□□□□ -1.63
TRIM56Q9BRZ2 SNORD108-201ENST00000459332 71 ntBASIC4.84□□□□□ -1.63
TRIM56Q9BRZ2 CREM-230ENST00000474931 626 ntTSL 2 BASIC4.84□□□□□ -1.63
TRIM56Q9BRZ2 MTND3P25-201ENST00000509243 135 ntBASIC4.84□□□□□ -1.63
TRIM56Q9BRZ2 SNORA25.11-201ENST00000515935 105 ntBASIC4.84□□□□□ -1.63
TRIM56Q9BRZ2 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4.84□□□□□ -1.63
TRIM56Q9BRZ2 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.84□□□□□ -1.63
TRIM56Q9BRZ2 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC4.84□□□□□ -1.63
TRIM56Q9BRZ2 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.84□□□□□ -1.63
TRIM56Q9BRZ2 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC4.84□□□□□ -1.63
TRIM56Q9BRZ2 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC4.84□□□□□ -1.63
TRIM56Q9BRZ2 AC068790.4-201ENST00000602474 263 ntBASIC4.84□□□□□ -1.63
TRIM56Q9BRZ2 AL360181.4-201ENST00000621752 134 ntBASIC4.84□□□□□ -1.63
TRIM56Q9BRZ2 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC4.84□□□□□ -1.63
TRIM56Q9BRZ2 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC4.84□□□□□ -1.63
TRIM56Q9BRZ2 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC4.84□□□□□ -1.63
TRIM56Q9BRZ2 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
TRIM56Q9BRZ2 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC4.84□□□□□ -1.63
TRIM56Q9BRZ2 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
TRIM56Q9BRZ2 TLK1P1-201ENST00000456760 2440 ntBASIC4.84□□□□□ -1.64
TRIM56Q9BRZ2 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC4.84□□□□□ -1.64
TRIM56Q9BRZ2 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.64
TRIM56Q9BRZ2 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.84□□□□□ -1.64
TRIM56Q9BRZ2 ZNF285B-201ENST00000561698 1767 ntBASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 UBE2L2-201ENST00000254302 429 ntBASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 Y_RNA.14-201ENST00000362415 103 ntBASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 MIR578-201ENST00000384828 96 ntBASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 MIR124-3-201ENST00000384866 87 ntBASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 SNORD96B-201ENST00000386148 79 ntBASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 U3.30-201ENST00000391308 210 ntBASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 LAP3P1-201ENST00000403648 294 ntBASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 AL353621.1-201ENST00000418219 243 ntBASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 UBE2D3P2-201ENST00000424409 445 ntBASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
TRIM56Q9BRZ2 RPS17P8-201ENST00000434525 335 ntBASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 114.7 ms