Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 RNA5SP446-201ENST00000515955 82 ntBASIC4.31□□□□□ -1.72
USP53Q70EK8 Vault.1-201ENST00000516474 102 ntBASIC4.31□□□□□ -1.72
USP53Q70EK8 RNU6-143P-201ENST00000516942 93 ntBASIC4.31□□□□□ -1.72
USP53Q70EK8 RNU6-1213P-201ENST00000517075 94 ntBASIC4.31□□□□□ -1.72
USP53Q70EK8 AC069113.1-201ENST00000517763 267 ntBASIC4.31□□□□□ -1.72
USP53Q70EK8 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC4.31□□□□□ -1.72
USP53Q70EK8 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4.31□□□□□ -1.72
USP53Q70EK8 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC4.31□□□□□ -1.72
USP53Q70EK8 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC4.31□□□□□ -1.72
USP53Q70EK8 AC025884.1-201ENST00000556034 378 ntBASIC4.31□□□□□ -1.72
USP53Q70EK8 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC4.31□□□□□ -1.72
USP53Q70EK8 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
USP53Q70EK8 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC4.31□□□□□ -1.72
USP53Q70EK8 AP000654.2-201ENST00000605633 586 ntBASIC4.31□□□□□ -1.72
USP53Q70EK8 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC4.31□□□□□ -1.72
USP53Q70EK8 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
USP53Q70EK8 AL031601.2-202ENST00000622650 282 ntBASIC4.31□□□□□ -1.72
USP53Q70EK8 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC4.31□□□□□ -1.72
USP53Q70EK8 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
USP53Q70EK8 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
USP53Q70EK8 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.31□□□□□ -1.72
USP53Q70EK8 MAPK10-303ENST00000641324 3959 ntBASIC4.31□□□□□ -1.72
USP53Q70EK8 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
USP53Q70EK8 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
USP53Q70EK8 CPHL1P-201ENST00000461341 3407 ntBASIC4.3□□□□□ -1.72
USP53Q70EK8 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.3□□□□□ -1.72
USP53Q70EK8 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.3□□□□□ -1.72
USP53Q70EK8 Y_RNA.31-201ENST00000362574 102 ntBASIC4.3□□□□□ -1.72
USP53Q70EK8 SNORA62.3-201ENST00000365110 153 ntBASIC4.3□□□□□ -1.72
USP53Q70EK8 SNORA22B-201ENST00000383876 138 ntBASIC4.3□□□□□ -1.72
USP53Q70EK8 MIR301A-201ENST00000385261 86 ntBASIC4.3□□□□□ -1.72
USP53Q70EK8 MIR1290-201ENST00000408735 78 ntBASIC4.3□□□□□ -1.72
USP53Q70EK8 AL353621.1-201ENST00000418219 243 ntBASIC4.3□□□□□ -1.72
USP53Q70EK8 RPL21P91-201ENST00000429231 479 ntBASIC4.3□□□□□ -1.72
USP53Q70EK8 ATP5HP2-201ENST00000433885 485 ntBASIC4.3□□□□□ -1.72
USP53Q70EK8 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC4.3□□□□□ -1.72
USP53Q70EK8 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC4.3□□□□□ -1.72
USP53Q70EK8 USP9YP7-201ENST00000436723 430 ntBASIC4.3□□□□□ -1.72
USP53Q70EK8 HIGD1AP11-201ENST00000438361 280 ntBASIC4.3□□□□□ -1.72
USP53Q70EK8 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
USP53Q70EK8 USP9YP32-201ENST00000452432 430 ntBASIC4.3□□□□□ -1.72
USP53Q70EK8 FPGT-203ENST00000467578 601 ntTSL 2 BASIC4.3□□□□□ -1.72
USP53Q70EK8 RPL7P5-201ENST00000471472 736 ntBASIC4.3□□□□□ -1.72
USP53Q70EK8 RPL23AP65-201ENST00000475608 468 ntBASIC4.3□□□□□ -1.72
USP53Q70EK8 AC084198.1-201ENST00000477747 402 ntBASIC4.3□□□□□ -1.72
USP53Q70EK8 AC096745.1-201ENST00000509945 370 ntBASIC4.3□□□□□ -1.72
USP53Q70EK8 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC4.3□□□□□ -1.72
USP53Q70EK8 AC026782.1-201ENST00000512952 449 ntBASIC4.3□□□□□ -1.72
USP53Q70EK8 RNU1-54P-201ENST00000517181 120 ntBASIC4.3□□□□□ -1.72
USP53Q70EK8 AC023632.4-201ENST00000517783 191 ntBASIC4.3□□□□□ -1.72
USP53Q70EK8 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
USP53Q70EK8 OR8R1P-201ENST00000543943 764 ntBASIC4.3□□□□□ -1.72
USP53Q70EK8 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC4.3□□□□□ -1.72
USP53Q70EK8 AL157871.3-201ENST00000557231 293 ntBASIC4.3□□□□□ -1.72
USP53Q70EK8 MIR1273C-201ENST00000578669 77 ntBASIC4.3□□□□□ -1.72
USP53Q70EK8 AC091178.1-203ENST00000584586 279 ntBASIC4.3□□□□□ -1.72
USP53Q70EK8 AC016925.2-201ENST00000605108 242 ntBASIC4.3□□□□□ -1.72
USP53Q70EK8 AC019193.3-201ENST00000609144 554 ntBASIC4.3□□□□□ -1.72
USP53Q70EK8 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC4.3□□□□□ -1.72
USP53Q70EK8 DLEU1_1.1-201ENST00000618107 190 ntBASIC4.3□□□□□ -1.72
USP53Q70EK8 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
USP53Q70EK8 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC4.3□□□□□ -1.72
USP53Q70EK8 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
USP53Q70EK8 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
USP53Q70EK8 EOGT-210ENST00000615922 1931 ntBASIC4.3□□□□□ -1.72
USP53Q70EK8 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
USP53Q70EK8 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
USP53Q70EK8 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
USP53Q70EK8 AC139713.2-215ENST00000641428 5037 ntBASIC4.3□□□□□ -1.72
USP53Q70EK8 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.3□□□□□ -1.72
USP53Q70EK8 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
USP53Q70EK8 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
USP53Q70EK8 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.29□□□□□ -1.72
USP53Q70EK8 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
USP53Q70EK8 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.29□□□□□ -1.72
USP53Q70EK8 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC4.29□□□□□ -1.72
USP53Q70EK8 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
USP53Q70EK8 AC138393.1-203ENST00000327086 343 ntBASIC4.29□□□□□ -1.72
USP53Q70EK8 SNORD62.1-201ENST00000362541 86 ntBASIC4.29□□□□□ -1.72
USP53Q70EK8 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
USP53Q70EK8 RNU2-3P-201ENST00000410144 191 ntBASIC4.29□□□□□ -1.72
USP53Q70EK8 CYCSP33-201ENST00000414485 327 ntBASIC4.29□□□□□ -1.72
USP53Q70EK8 UBE2V1P4-201ENST00000425374 344 ntBASIC4.29□□□□□ -1.72
USP53Q70EK8 AC006946.1-201ENST00000429106 328 ntBASIC4.29□□□□□ -1.72
USP53Q70EK8 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC4.29□□□□□ -1.72
USP53Q70EK8 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC4.29□□□□□ -1.72
USP53Q70EK8 DHFRP3-201ENST00000455595 559 ntBASIC4.29□□□□□ -1.72
USP53Q70EK8 HMGB3P30-201ENST00000457863 606 ntBASIC4.29□□□□□ -1.72
USP53Q70EK8 AC078817.1-201ENST00000492623 435 ntBASIC4.29□□□□□ -1.72
USP53Q70EK8 AC022493.1-201ENST00000492984 337 ntBASIC4.29□□□□□ -1.72
USP53Q70EK8 AC097473.1-201ENST00000508142 408 ntBASIC4.29□□□□□ -1.72
USP53Q70EK8 SNORA31.8-201ENST00000516327 108 ntBASIC4.29□□□□□ -1.72
USP53Q70EK8 RNU6-1256P-201ENST00000516539 103 ntBASIC4.29□□□□□ -1.72
USP53Q70EK8 Y_RNA.708-201ENST00000516950 96 ntBASIC4.29□□□□□ -1.72
USP53Q70EK8 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.29□□□□□ -1.72
USP53Q70EK8 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC4.29□□□□□ -1.72
USP53Q70EK8 AC018462.2-201ENST00000605375 395 ntBASIC4.29□□□□□ -1.72
USP53Q70EK8 AC005344.1-201ENST00000613391 459 ntBASIC4.29□□□□□ -1.72
USP53Q70EK8 SNX18P1Y-201ENST00000616231 511 ntBASIC4.29□□□□□ -1.72
USP53Q70EK8 RMST_9.1-201ENST00000619945 193 ntBASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 191.6 ms