Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 MIR1273C-201ENST00000578669 77 ntBASIC4.68□□□□□ -1.66
SF3A1Q15459 U2.17-201ENST00000611454 95 ntBASIC4.68□□□□□ -1.66
SF3A1Q15459 AC099506.2-201ENST00000623074 221 ntBASIC4.68□□□□□ -1.66
SF3A1Q15459 AC073308.1-201ENST00000623696 305 ntBASIC4.68□□□□□ -1.66
SF3A1Q15459 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC4.68□□□□□ -1.66
SF3A1Q15459 AP003400.5-201ENST00000624827 617 ntBASIC4.68□□□□□ -1.66
SF3A1Q15459 AC068724.3-201ENST00000625906 87 ntBASIC4.68□□□□□ -1.66
SF3A1Q15459 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC4.68□□□□□ -1.66
SF3A1Q15459 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC4.68□□□□□ -1.66
SF3A1Q15459 FTO-223ENST00000640179 210 ntTSL 5 BASIC4.68□□□□□ -1.66
SF3A1Q15459 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.68□□□□□ -1.66
SF3A1Q15459 AL359693.1-201ENST00000614959 2407 ntBASIC4.68□□□□□ -1.66
SF3A1Q15459 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
SF3A1Q15459 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.67□□□□□ -1.66
SF3A1Q15459 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.67□□□□□ -1.66
SF3A1Q15459 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC4.67□□□□□ -1.66
SF3A1Q15459 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
SF3A1Q15459 Y_RNA.126-201ENST00000363382 111 ntBASIC4.67□□□□□ -1.66
SF3A1Q15459 PARD3-204ENST00000374768 799 ntTSL 3 BASIC4.67□□□□□ -1.66
SF3A1Q15459 RNU6-217P-201ENST00000384164 104 ntBASIC4.67□□□□□ -1.66
SF3A1Q15459 RNU6-434P-201ENST00000384376 107 ntBASIC4.67□□□□□ -1.66
SF3A1Q15459 RPS4XP7-201ENST00000406274 780 ntBASIC4.67□□□□□ -1.66
SF3A1Q15459 RN7SKP27-201ENST00000410684 333 ntBASIC4.67□□□□□ -1.66
SF3A1Q15459 RNA5SP39-201ENST00000411245 120 ntBASIC4.67□□□□□ -1.66
SF3A1Q15459 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC4.67□□□□□ -1.66
SF3A1Q15459 ARL5AP1-201ENST00000418991 388 ntBASIC4.67□□□□□ -1.66
SF3A1Q15459 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
SF3A1Q15459 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC4.67□□□□□ -1.66
SF3A1Q15459 VN1R34P-201ENST00000447387 883 ntBASIC4.67□□□□□ -1.66
SF3A1Q15459 RPS26P15-201ENST00000488067 348 ntBASIC4.67□□□□□ -1.66
SF3A1Q15459 AC091167.1-201ENST00000492017 396 ntBASIC4.67□□□□□ -1.66
SF3A1Q15459 RPL31P61-201ENST00000496160 376 ntBASIC4.67□□□□□ -1.66
SF3A1Q15459 AC098799.2-201ENST00000509466 868 ntBASIC4.67□□□□□ -1.66
SF3A1Q15459 RN7SKP21-201ENST00000516503 220 ntBASIC4.67□□□□□ -1.66
SF3A1Q15459 AL118558.2-201ENST00000556294 238 ntBASIC4.67□□□□□ -1.66
SF3A1Q15459 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC4.67□□□□□ -1.66
SF3A1Q15459 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC4.67□□□□□ -1.66
SF3A1Q15459 MIR1254-2-201ENST00000579553 63 ntBASIC4.67□□□□□ -1.66
SF3A1Q15459 AC023575.1-201ENST00000580510 358 ntBASIC4.67□□□□□ -1.66
SF3A1Q15459 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC4.67□□□□□ -1.66
SF3A1Q15459 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC4.67□□□□□ -1.66
SF3A1Q15459 MIR3609-201ENST00000582661 80 ntBASIC4.67□□□□□ -1.66
SF3A1Q15459 MIR7151-201ENST00000617477 60 ntBASIC4.67□□□□□ -1.66
SF3A1Q15459 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC4.67□□□□□ -1.66
SF3A1Q15459 AC022336.2-201ENST00000568966 2538 ntBASIC4.67□□□□□ -1.66
SF3A1Q15459 AP001486.2-201ENST00000561652 5113 ntBASIC4.66□□□□□ -1.66
SF3A1Q15459 LARP1BP1-201ENST00000506036 1359 ntBASIC4.66□□□□□ -1.66
SF3A1Q15459 MTND4P35-201ENST00000604257 1375 ntBASIC4.66□□□□□ -1.66
SF3A1Q15459 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SF3A1Q15459 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SF3A1Q15459 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SF3A1Q15459 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SF3A1Q15459 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SF3A1Q15459 Y_RNA.378-201ENST00000365652 113 ntBASIC4.66□□□□□ -1.66
SF3A1Q15459 MDM4-202ENST00000367180 547 ntTSL 3 BASIC4.66□□□□□ -1.66
SF3A1Q15459 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SF3A1Q15459 RNU6-45P-201ENST00000384471 107 ntBASIC4.66□□□□□ -1.66
SF3A1Q15459 RNU6-1179P-201ENST00000384667 107 ntBASIC4.66□□□□□ -1.66
SF3A1Q15459 MIR578-201ENST00000384828 96 ntBASIC4.66□□□□□ -1.66
SF3A1Q15459 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
SF3A1Q15459 Y_RNA.615-201ENST00000410769 117 ntBASIC4.66□□□□□ -1.66
SF3A1Q15459 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC4.66□□□□□ -1.66
SF3A1Q15459 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC4.66□□□□□ -1.66
SF3A1Q15459 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC4.66□□□□□ -1.66
SF3A1Q15459 MTND3P10-201ENST00000450967 341 ntBASIC4.66□□□□□ -1.66
SF3A1Q15459 NUTF2P7-201ENST00000453086 375 ntBASIC4.66□□□□□ -1.66
SF3A1Q15459 HMGN2P26-201ENST00000463169 339 ntBASIC4.66□□□□□ -1.66
SF3A1Q15459 AC010618.1-201ENST00000469924 477 ntBASIC4.66□□□□□ -1.66
SF3A1Q15459 AC139453.3-201ENST00000493276 369 ntBASIC4.66□□□□□ -1.66
SF3A1Q15459 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC4.66□□□□□ -1.66
SF3A1Q15459 AC104136.1-201ENST00000512969 394 ntBASIC4.66□□□□□ -1.66
SF3A1Q15459 CENPUP1-201ENST00000526649 1202 ntBASIC4.66□□□□□ -1.66
SF3A1Q15459 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC4.66□□□□□ -1.66
SF3A1Q15459 AC025627.2-201ENST00000576220 160 ntBASIC4.66□□□□□ -1.66
SF3A1Q15459 AC092747.3-201ENST00000603769 301 ntBASIC4.66□□□□□ -1.66
SF3A1Q15459 AC092807.2-201ENST00000609367 243 ntBASIC4.66□□□□□ -1.66
SF3A1Q15459 MIR6716-201ENST00000613413 80 ntBASIC4.66□□□□□ -1.66
SF3A1Q15459 DUXAP9-208ENST00000622815 614 ntBASIC4.66□□□□□ -1.66
SF3A1Q15459 MIR3653-201ENST00000625572 110 ntBASIC4.66□□□□□ -1.66
SF3A1Q15459 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SF3A1Q15459 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.65□□□□□ -1.66
SF3A1Q15459 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.66
SF3A1Q15459 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC4.65□□□□□ -1.66
SF3A1Q15459 MIR383-201ENST00000362257 73 ntBASIC4.65□□□□□ -1.67
SF3A1Q15459 Y_RNA.88-201ENST00000363029 99 ntBASIC4.65□□□□□ -1.67
SF3A1Q15459 Y_RNA.373-201ENST00000365600 103 ntBASIC4.65□□□□□ -1.67
SF3A1Q15459 RNU6-1035P-201ENST00000384477 107 ntBASIC4.65□□□□□ -1.67
SF3A1Q15459 SNORA16.2-201ENST00000390991 127 ntBASIC4.65□□□□□ -1.67
SF3A1Q15459 RPL21P17-201ENST00000397467 475 ntBASIC4.65□□□□□ -1.67
SF3A1Q15459 AL162578.1-201ENST00000406202 378 ntBASIC4.65□□□□□ -1.67
SF3A1Q15459 MIR1251-201ENST00000408552 70 ntBASIC4.65□□□□□ -1.67
SF3A1Q15459 OFD1P1Y-201ENST00000411756 1225 ntBASIC4.65□□□□□ -1.67
SF3A1Q15459 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC4.65□□□□□ -1.67
SF3A1Q15459 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC4.65□□□□□ -1.67
SF3A1Q15459 SRIP2-201ENST00000428470 166 ntBASIC4.65□□□□□ -1.67
SF3A1Q15459 AL669831.1-202ENST00000428504 417 ntBASIC4.65□□□□□ -1.67
SF3A1Q15459 AC087650.1-201ENST00000431445 468 ntBASIC4.65□□□□□ -1.67
SF3A1Q15459 GTF2IP13-201ENST00000438487 386 ntBASIC4.65□□□□□ -1.67
SF3A1Q15459 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.65□□□□□ -1.67
SF3A1Q15459 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC4.65□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 106.6 ms