Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 U2.15-201ENST00000611544 191 ntBASIC1.8□□□□□ -2.12
CPSF4O95639 U2.16-201ENST00000613119 191 ntBASIC1.8□□□□□ -2.12
CPSF4O95639 U2.12-201ENST00000613778 191 ntBASIC1.8□□□□□ -2.12
CPSF4O95639 U2.20-201ENST00000613956 192 ntBASIC1.8□□□□□ -2.12
CPSF4O95639 U2.9-201ENST00000615427 191 ntBASIC1.8□□□□□ -2.12
CPSF4O95639 U2.11-201ENST00000616345 191 ntBASIC1.8□□□□□ -2.12
CPSF4O95639 U2.2-201ENST00000616535 191 ntBASIC1.8□□□□□ -2.12
CPSF4O95639 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC1.8□□□□□ -2.12
CPSF4O95639 U2.3-201ENST00000617785 191 ntBASIC1.8□□□□□ -2.12
CPSF4O95639 MIR4509-1-201ENST00000618224 94 ntBASIC1.8□□□□□ -2.12
CPSF4O95639 U2.19-201ENST00000618602 191 ntBASIC1.8□□□□□ -2.12
CPSF4O95639 RNU2-1-201ENST00000618664 191 ntBASIC1.8□□□□□ -2.12
CPSF4O95639 U2.6-201ENST00000619225 191 ntBASIC1.8□□□□□ -2.12
CPSF4O95639 AC006386.1-201ENST00000619436 415 ntBASIC1.8□□□□□ -2.12
CPSF4O95639 U2.5-201ENST00000619465 191 ntBASIC1.8□□□□□ -2.12
CPSF4O95639 U2.10-201ENST00000620268 191 ntBASIC1.8□□□□□ -2.12
CPSF4O95639 YWHAEP7-203ENST00000622054 312 ntBASIC1.8□□□□□ -2.12
CPSF4O95639 AC103798.2-201ENST00000624292 632 ntBASIC1.8□□□□□ -2.12
CPSF4O95639 AC010608.3-201ENST00000625048 527 ntBASIC1.8□□□□□ -2.12
CPSF4O95639 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC1.8□□□□□ -2.12
CPSF4O95639 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
CPSF4O95639 AC011477.1-204ENST00000623416 1325 ntBASIC1.8□□□□□ -2.12
CPSF4O95639 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC1.8□□□□□ -2.12
CPSF4O95639 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.8□□□□□ -2.12
CPSF4O95639 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
CPSF4O95639 RNU6-1078P-201ENST00000364522 103 ntBASIC1.79□□□□□ -2.12
CPSF4O95639 RNU6-198P-201ENST00000384258 104 ntBASIC1.79□□□□□ -2.12
CPSF4O95639 RNU6-1242P-201ENST00000391052 103 ntBASIC1.79□□□□□ -2.12
CPSF4O95639 CASP3-203ENST00000393588 677 ntTSL 4 BASIC1.79□□□□□ -2.12
CPSF4O95639 AL356421.1-201ENST00000403255 413 ntBASIC1.79□□□□□ -2.12
CPSF4O95639 AL513331.1-201ENST00000411908 397 ntBASIC1.79□□□□□ -2.12
CPSF4O95639 MTCYBP38-201ENST00000417160 1123 ntBASIC1.79□□□□□ -2.12
CPSF4O95639 AC008850.1-201ENST00000427546 362 ntBASIC1.79□□□□□ -2.12
CPSF4O95639 AL356867.1-201ENST00000429623 299 ntBASIC1.79□□□□□ -2.12
CPSF4O95639 AL139415.2-201ENST00000431968 163 ntBASIC1.79□□□□□ -2.12
CPSF4O95639 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC1.79□□□□□ -2.12
CPSF4O95639 RPS25P9-201ENST00000435591 252 ntBASIC1.79□□□□□ -2.12
CPSF4O95639 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC1.79□□□□□ -2.12
CPSF4O95639 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC1.79□□□□□ -2.12
CPSF4O95639 MTND2P24-201ENST00000453434 806 ntBASIC1.79□□□□□ -2.12
CPSF4O95639 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC1.79□□□□□ -2.12
CPSF4O95639 RNU6-420P-201ENST00000458780 107 ntBASIC1.79□□□□□ -2.12
CPSF4O95639 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC1.79□□□□□ -2.12
CPSF4O95639 AC104563.1-201ENST00000476147 376 ntBASIC1.79□□□□□ -2.12
CPSF4O95639 AC021382.1-201ENST00000483523 359 ntBASIC1.79□□□□□ -2.12
CPSF4O95639 RPS15AP34-201ENST00000487776 387 ntBASIC1.79□□□□□ -2.12
CPSF4O95639 AC108729.1-201ENST00000487812 947 ntBASIC1.79□□□□□ -2.12
CPSF4O95639 WDR78-207ENST00000488333 613 ntTSL 3 BASIC1.79□□□□□ -2.12
CPSF4O95639 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC1.79□□□□□ -2.12
CPSF4O95639 SCARNA15.2-201ENST00000516409 127 ntBASIC1.79□□□□□ -2.12
CPSF4O95639 HMGN1P28-201ENST00000521340 364 ntBASIC1.79□□□□□ -2.12
CPSF4O95639 SUB1P1-201ENST00000524415 382 ntBASIC1.79□□□□□ -2.12
CPSF4O95639 HMGB1P14-201ENST00000557424 591 ntBASIC1.79□□□□□ -2.12
CPSF4O95639 AMZ2P1-203ENST00000565833 850 ntBASIC1.79□□□□□ -2.12
CPSF4O95639 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC1.79□□□□□ -2.12
CPSF4O95639 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.79□□□□□ -2.12
CPSF4O95639 MIR4448-201ENST00000584360 86 ntBASIC1.79□□□□□ -2.12
CPSF4O95639 AL136363.1-201ENST00000605349 337 ntBASIC1.79□□□□□ -2.12
CPSF4O95639 RNU4-5P-201ENST00000607255 135 ntBASIC1.79□□□□□ -2.12
CPSF4O95639 AL391834.2-201ENST00000609982 546 ntBASIC1.79□□□□□ -2.12
CPSF4O95639 AL109620.1-201ENST00000618738 1197 ntBASIC1.79□□□□□ -2.12
CPSF4O95639 AC022306.3-201ENST00000619930 550 ntBASIC1.79□□□□□ -2.12
CPSF4O95639 MIR6852-201ENST00000621699 66 ntBASIC1.79□□□□□ -2.12
CPSF4O95639 AC079597.1-201ENST00000624306 508 ntBASIC1.79□□□□□ -2.12
CPSF4O95639 OR5H6-203ENST00000642105 978 ntBASIC1.79□□□□□ -2.12
CPSF4O95639 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC1.79□□□□□ -2.12
CPSF4O95639 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC1.79□□□□□ -2.12
CPSF4O95639 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
CPSF4O95639 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
CPSF4O95639 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC1.79□□□□□ -2.12
CPSF4O95639 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
CPSF4O95639 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
CPSF4O95639 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
CPSF4O95639 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC1.78□□□□□ -2.12
CPSF4O95639 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
CPSF4O95639 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
CPSF4O95639 ATP8A2P3-201ENST00000426792 1536 ntBASIC1.78□□□□□ -2.12
CPSF4O95639 ELF2P3-201ENST00000445099 1506 ntBASIC1.78□□□□□ -2.12
CPSF4O95639 AC099786.3-201ENST00000565735 1410 ntBASIC1.78□□□□□ -2.12
CPSF4O95639 DDX43P2-201ENST00000604753 1354 ntBASIC1.78□□□□□ -2.12
CPSF4O95639 RNU6-777P-201ENST00000364265 104 ntBASIC1.78□□□□□ -2.12
CPSF4O95639 SNORA16.1-201ENST00000364597 132 ntBASIC1.78□□□□□ -2.12
CPSF4O95639 RNU6-744P-201ENST00000365557 107 ntBASIC1.78□□□□□ -2.12
CPSF4O95639 SET-203ENST00000372688 801 ntTSL 2 BASIC1.78□□□□□ -2.12
CPSF4O95639 RNU6-637P-201ENST00000384050 107 ntBASIC1.78□□□□□ -2.12
CPSF4O95639 RNU6-1316P-201ENST00000384242 108 ntBASIC1.78□□□□□ -2.12
CPSF4O95639 RNU6-114P-201ENST00000384704 105 ntBASIC1.78□□□□□ -2.12
CPSF4O95639 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
CPSF4O95639 USP9YP33-201ENST00000412220 421 ntBASIC1.78□□□□□ -2.12
CPSF4O95639 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC1.78□□□□□ -2.12
CPSF4O95639 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC1.78□□□□□ -2.12
CPSF4O95639 SPA17P1-201ENST00000416656 452 ntBASIC1.78□□□□□ -2.12
CPSF4O95639 HMGN2P19-201ENST00000425149 265 ntBASIC1.78□□□□□ -2.12
CPSF4O95639 AC092648.1-201ENST00000425870 423 ntBASIC1.78□□□□□ -2.12
CPSF4O95639 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC1.78□□□□□ -2.12
CPSF4O95639 AL590383.1-201ENST00000428602 75 ntBASIC1.78□□□□□ -2.12
CPSF4O95639 AL512844.2-201ENST00000433990 593 ntBASIC1.78□□□□□ -2.12
CPSF4O95639 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC1.78□□□□□ -2.12
CPSF4O95639 USP9YP35-201ENST00000435696 412 ntBASIC1.78□□□□□ -2.12
CPSF4O95639 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC1.78□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms