Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 RBM6-203ENST00000421682 684 ntTSL 2 BASIC3.11□□□□□ -1.91
LMX1BO60663 AC008850.1-201ENST00000427546 362 ntBASIC3.11□□□□□ -1.91
LMX1BO60663 OR2AS1P-201ENST00000427827 319 ntBASIC3.11□□□□□ -1.91
LMX1BO60663 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.11□□□□□ -1.91
LMX1BO60663 LAMTOR3P1-201ENST00000428620 370 ntBASIC3.11□□□□□ -1.91
LMX1BO60663 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.11□□□□□ -1.91
LMX1BO60663 TRAPPC2P9-201ENST00000434556 343 ntBASIC3.11□□□□□ -1.91
LMX1BO60663 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC3.11□□□□□ -1.91
LMX1BO60663 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC3.11□□□□□ -1.91
LMX1BO60663 CBWD4P-201ENST00000445695 655 ntBASIC3.11□□□□□ -1.91
LMX1BO60663 AC016696.1-201ENST00000446949 318 ntBASIC3.11□□□□□ -1.91
LMX1BO60663 AC010655.1-201ENST00000449336 292 ntBASIC3.11□□□□□ -1.91
LMX1BO60663 AC140076.1-201ENST00000449897 361 ntBASIC3.11□□□□□ -1.91
LMX1BO60663 SNORD105B-201ENST00000458770 79 ntBASIC3.11□□□□□ -1.91
LMX1BO60663 RNU7-63P-201ENST00000459054 62 ntBASIC3.11□□□□□ -1.91
LMX1BO60663 RNU7-59P-201ENST00000459101 61 ntBASIC3.11□□□□□ -1.91
LMX1BO60663 AC004801.2-202ENST00000463559 283 ntBASIC3.11□□□□□ -1.91
LMX1BO60663 AC078785.3-201ENST00000476607 425 ntBASIC3.11□□□□□ -1.91
LMX1BO60663 AC135721.1-201ENST00000497954 479 ntBASIC3.11□□□□□ -1.91
LMX1BO60663 AC092436.1-201ENST00000506450 503 ntBASIC3.11□□□□□ -1.91
LMX1BO60663 RNA5SP309-201ENST00000516670 106 ntBASIC3.11□□□□□ -1.91
LMX1BO60663 SNORA70.18-201ENST00000516696 98 ntBASIC3.11□□□□□ -1.91
LMX1BO60663 RN7SKP219-201ENST00000516825 296 ntBASIC3.11□□□□□ -1.91
LMX1BO60663 SNORD60.2-201ENST00000516883 86 ntBASIC3.11□□□□□ -1.91
LMX1BO60663 RNU6-64P-201ENST00000517119 105 ntBASIC3.11□□□□□ -1.91
LMX1BO60663 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC3.11□□□□□ -1.91
LMX1BO60663 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC3.11□□□□□ -1.91
LMX1BO60663 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.11□□□□□ -1.91
LMX1BO60663 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC3.11□□□□□ -1.91
LMX1BO60663 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC3.11□□□□□ -1.91
LMX1BO60663 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC3.11□□□□□ -1.91
LMX1BO60663 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC3.11□□□□□ -1.91
LMX1BO60663 MIR4775-201ENST00000581168 75 ntBASIC3.11□□□□□ -1.91
LMX1BO60663 AL669831.4-202ENST00000590817 238 ntBASIC3.11□□□□□ -1.91
LMX1BO60663 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.11□□□□□ -1.91
LMX1BO60663 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
LMX1BO60663 AC007742.2-201ENST00000618226 398 ntBASIC3.11□□□□□ -1.91
LMX1BO60663 AC022149.2-201ENST00000621061 203 ntBASIC3.11□□□□□ -1.91
LMX1BO60663 AL136221.1-201ENST00000621449 509 ntBASIC3.11□□□□□ -1.91
LMX1BO60663 AC005858.4-201ENST00000623191 700 ntBASIC3.11□□□□□ -1.91
LMX1BO60663 AC090617.10-201ENST00000624308 134 ntBASIC3.11□□□□□ -1.91
LMX1BO60663 ATM-228ENST00000639240 498 ntTSL 5 BASIC3.11□□□□□ -1.91
LMX1BO60663 ATM-230ENST00000640388 578 ntTSL 5 BASIC3.11□□□□□ -1.91
LMX1BO60663 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.11□□□□□ -1.91
LMX1BO60663 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.11□□□□□ -1.91
LMX1BO60663 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.11□□□□□ -1.91
LMX1BO60663 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
LMX1BO60663 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
LMX1BO60663 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.11□□□□□ -1.91
LMX1BO60663 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
LMX1BO60663 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.11□□□□□ -1.91
LMX1BO60663 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC3.1□□□□□ -1.91
LMX1BO60663 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.1□□□□□ -1.91
LMX1BO60663 MIR30E-201ENST00000362104 92 ntBASIC3.1□□□□□ -1.91
LMX1BO60663 RNU6-263P-201ENST00000363811 107 ntBASIC3.1□□□□□ -1.91
LMX1BO60663 SNORD6-201ENST00000365444 73 ntBASIC3.1□□□□□ -1.91
LMX1BO60663 Y_RNA.356-201ENST00000365475 113 ntBASIC3.1□□□□□ -1.91
LMX1BO60663 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC3.1□□□□□ -1.91
LMX1BO60663 MIR514A2-201ENST00000385131 88 ntBASIC3.1□□□□□ -1.91
LMX1BO60663 MIR514A3-201ENST00000385132 88 ntBASIC3.1□□□□□ -1.91
LMX1BO60663 MT-TC-201ENST00000387405 66 ntBASIC3.1□□□□□ -1.91
LMX1BO60663 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
LMX1BO60663 RNU6-821P-201ENST00000390995 107 ntBASIC3.1□□□□□ -1.91
LMX1BO60663 RNU6-754P-201ENST00000391166 107 ntBASIC3.1□□□□□ -1.91
LMX1BO60663 AL356432.1-201ENST00000405809 419 ntBASIC3.1□□□□□ -1.91
LMX1BO60663 RNU2-62P-201ENST00000410868 191 ntBASIC3.1□□□□□ -1.91
LMX1BO60663 AC007390.1-201ENST00000415722 356 ntBASIC3.1□□□□□ -1.91
LMX1BO60663 AL158156.1-201ENST00000422509 473 ntBASIC3.1□□□□□ -1.91
LMX1BO60663 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC3.1□□□□□ -1.91
LMX1BO60663 MTCO3P46-201ENST00000425787 232 ntBASIC3.1□□□□□ -1.91
LMX1BO60663 MED13P1-201ENST00000428342 171 ntBASIC3.1□□□□□ -1.91
LMX1BO60663 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.1□□□□□ -1.91
LMX1BO60663 MRPS18BP2-201ENST00000434310 759 ntBASIC3.1□□□□□ -1.91
LMX1BO60663 AC073063.1-201ENST00000434352 607 ntBASIC3.1□□□□□ -1.91
LMX1BO60663 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.1□□□□□ -1.91
LMX1BO60663 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.1□□□□□ -1.91
LMX1BO60663 AC005094.1-201ENST00000440420 368 ntBASIC3.1□□□□□ -1.91
LMX1BO60663 CYCSP32-201ENST00000440548 321 ntBASIC3.1□□□□□ -1.91
LMX1BO60663 ANP32BP2-201ENST00000454525 545 ntBASIC3.1□□□□□ -1.91
LMX1BO60663 AC108059.3-201ENST00000456388 214 ntBASIC3.1□□□□□ -1.91
LMX1BO60663 snoU13.3-201ENST00000459441 104 ntBASIC3.1□□□□□ -1.91
LMX1BO60663 HMGN2P26-201ENST00000463169 339 ntBASIC3.1□□□□□ -1.91
LMX1BO60663 AC006512.1-201ENST00000468816 291 ntBASIC3.1□□□□□ -1.91
LMX1BO60663 AC126389.1-201ENST00000477436 290 ntBASIC3.1□□□□□ -1.91
LMX1BO60663 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC3.1□□□□□ -1.91
LMX1BO60663 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC3.1□□□□□ -1.91
LMX1BO60663 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
LMX1BO60663 RPL38P4-201ENST00000502376 214 ntBASIC3.1□□□□□ -1.91
LMX1BO60663 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC3.1□□□□□ -1.91
LMX1BO60663 AC004062.1-201ENST00000509926 645 ntBASIC3.1□□□□□ -1.91
LMX1BO60663 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.1□□□□□ -1.91
LMX1BO60663 GMPSP1-201ENST00000514075 579 ntBASIC3.1□□□□□ -1.91
LMX1BO60663 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.1□□□□□ -1.91
LMX1BO60663 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.1□□□□□ -1.91
LMX1BO60663 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
LMX1BO60663 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
LMX1BO60663 OR8L1P-201ENST00000534005 955 ntBASIC3.1□□□□□ -1.91
LMX1BO60663 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC3.1□□□□□ -1.91
LMX1BO60663 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.1□□□□□ -1.91
LMX1BO60663 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 95 ms