Protein–RNA interactions for Protein: Q9CXF7

Chd1l, Chromodomain-helicase-DNA-binding protein 1-like, mousemouse

Predictions only

Length 900 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd1lQ9CXF7 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Chd1lQ9CXF7 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
Chd1lQ9CXF7 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Chd1lQ9CXF7 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
Chd1lQ9CXF7 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Chd1lQ9CXF7 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Chd1lQ9CXF7 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Chd1lQ9CXF7 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
Chd1lQ9CXF7 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Chd1lQ9CXF7 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Chd1lQ9CXF7 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC18.41■□□□□ 0.54
Chd1lQ9CXF7 Gm18284-201ENSMUST00000172604 624 ntBASIC18.41■□□□□ 0.54
Chd1lQ9CXF7 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
Chd1lQ9CXF7 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Chd1lQ9CXF7 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Chd1lQ9CXF7 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Chd1lQ9CXF7 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Chd1lQ9CXF7 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Chd1lQ9CXF7 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Chd1lQ9CXF7 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chd1lQ9CXF7 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Chd1lQ9CXF7 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC18.4■□□□□ 0.54
Chd1lQ9CXF7 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chd1lQ9CXF7 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Chd1lQ9CXF7 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chd1lQ9CXF7 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chd1lQ9CXF7 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC18.4■□□□□ 0.54
Chd1lQ9CXF7 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC18.4■□□□□ 0.54
Chd1lQ9CXF7 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Chd1lQ9CXF7 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Chd1lQ9CXF7 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC18.4■□□□□ 0.54
Chd1lQ9CXF7 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chd1lQ9CXF7 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chd1lQ9CXF7 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Chd1lQ9CXF7 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC18.4■□□□□ 0.54
Chd1lQ9CXF7 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
Chd1lQ9CXF7 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.54
Chd1lQ9CXF7 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
Chd1lQ9CXF7 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.54
Chd1lQ9CXF7 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Chd1lQ9CXF7 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Chd1lQ9CXF7 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Chd1lQ9CXF7 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
Chd1lQ9CXF7 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC18.39■□□□□ 0.53
Chd1lQ9CXF7 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC18.39■□□□□ 0.53
Chd1lQ9CXF7 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Chd1lQ9CXF7 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Chd1lQ9CXF7 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Chd1lQ9CXF7 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Chd1lQ9CXF7 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
Chd1lQ9CXF7 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Chd1lQ9CXF7 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
Chd1lQ9CXF7 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
Chd1lQ9CXF7 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Chd1lQ9CXF7 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Chd1lQ9CXF7 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Chd1lQ9CXF7 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Chd1lQ9CXF7 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Chd1lQ9CXF7 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC18.38■□□□□ 0.53
Chd1lQ9CXF7 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Chd1lQ9CXF7 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
Chd1lQ9CXF7 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Chd1lQ9CXF7 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Chd1lQ9CXF7 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
Chd1lQ9CXF7 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Chd1lQ9CXF7 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Chd1lQ9CXF7 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Chd1lQ9CXF7 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Chd1lQ9CXF7 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Chd1lQ9CXF7 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Chd1lQ9CXF7 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Chd1lQ9CXF7 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Chd1lQ9CXF7 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Chd1lQ9CXF7 Gm29340-201ENSMUST00000188763 3854 ntBASIC18.37■□□□□ 0.53
Chd1lQ9CXF7 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Chd1lQ9CXF7 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Chd1lQ9CXF7 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Chd1lQ9CXF7 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Chd1lQ9CXF7 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Chd1lQ9CXF7 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Chd1lQ9CXF7 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Chd1lQ9CXF7 Gm18958-201ENSMUST00000174258 762 ntBASIC18.37■□□□□ 0.53
Chd1lQ9CXF7 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Chd1lQ9CXF7 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Chd1lQ9CXF7 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Chd1lQ9CXF7 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Chd1lQ9CXF7 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC18.37■□□□□ 0.53
Chd1lQ9CXF7 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
Chd1lQ9CXF7 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Chd1lQ9CXF7 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Chd1lQ9CXF7 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Chd1lQ9CXF7 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Chd1lQ9CXF7 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Chd1lQ9CXF7 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Chd1lQ9CXF7 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Chd1lQ9CXF7 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Chd1lQ9CXF7 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Chd1lQ9CXF7 Olfr533-202ENSMUST00000211093 2397 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
Chd1lQ9CXF7 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Chd1lQ9CXF7 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms