Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Lsm1Q8VC85 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
Lsm1Q8VC85 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC15.6■□□□□ 0.09
Lsm1Q8VC85 Ntrk2-205ENSMUST00000224402 2284 ntBASIC15.6■□□□□ 0.09
Lsm1Q8VC85 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Lsm1Q8VC85 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Lsm1Q8VC85 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
Lsm1Q8VC85 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Lsm1Q8VC85 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Lsm1Q8VC85 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Lsm1Q8VC85 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Lsm1Q8VC85 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
Lsm1Q8VC85 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Lsm1Q8VC85 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Lsm1Q8VC85 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Lsm1Q8VC85 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC15.59■□□□□ 0.09
Lsm1Q8VC85 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Lsm1Q8VC85 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Lsm1Q8VC85 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Lsm1Q8VC85 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
Lsm1Q8VC85 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Lsm1Q8VC85 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Lsm1Q8VC85 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Lsm1Q8VC85 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Lsm1Q8VC85 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Lsm1Q8VC85 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC15.59■□□□□ 0.09
Lsm1Q8VC85 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Lsm1Q8VC85 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Lsm1Q8VC85 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Lsm1Q8VC85 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Lsm1Q8VC85 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
Lsm1Q8VC85 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
Lsm1Q8VC85 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC15.59■□□□□ 0.09
Lsm1Q8VC85 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Lsm1Q8VC85 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.09
Lsm1Q8VC85 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
Lsm1Q8VC85 Gm15442-201ENSMUST00000117905 1527 ntBASIC15.58■□□□□ 0.09
Lsm1Q8VC85 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
Lsm1Q8VC85 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Lsm1Q8VC85 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
Lsm1Q8VC85 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.09
Lsm1Q8VC85 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.09
Lsm1Q8VC85 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
Lsm1Q8VC85 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Lsm1Q8VC85 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Lsm1Q8VC85 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Lsm1Q8VC85 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Lsm1Q8VC85 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Lsm1Q8VC85 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Lsm1Q8VC85 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC15.58■□□□□ 0.08
Lsm1Q8VC85 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Lsm1Q8VC85 Mir1668-201ENSMUST00000184114 107 ntBASIC15.58■□□□□ 0.08
Lsm1Q8VC85 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC15.58■□□□□ 0.08
Lsm1Q8VC85 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Lsm1Q8VC85 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Lsm1Q8VC85 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Lsm1Q8VC85 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC15.58■□□□□ 0.08
Lsm1Q8VC85 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Lsm1Q8VC85 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
Lsm1Q8VC85 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Lsm1Q8VC85 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Lsm1Q8VC85 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Lsm1Q8VC85 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
Lsm1Q8VC85 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
Lsm1Q8VC85 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Lsm1Q8VC85 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Lsm1Q8VC85 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
Lsm1Q8VC85 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Lsm1Q8VC85 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
Lsm1Q8VC85 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Lsm1Q8VC85 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
Lsm1Q8VC85 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC15.57■□□□□ 0.08
Lsm1Q8VC85 Gm16011-201ENSMUST00000121567 2662 ntBASIC15.57■□□□□ 0.08
Lsm1Q8VC85 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Lsm1Q8VC85 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Lsm1Q8VC85 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Lsm1Q8VC85 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC15.57■□□□□ 0.08
Lsm1Q8VC85 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC15.57■□□□□ 0.08
Lsm1Q8VC85 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC15.57■□□□□ 0.08
Lsm1Q8VC85 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Lsm1Q8VC85 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC15.57■□□□□ 0.08
Lsm1Q8VC85 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC15.57■□□□□ 0.08
Lsm1Q8VC85 AC159205.6-201ENSMUST00000224935 887 ntBASIC15.57■□□□□ 0.08
Lsm1Q8VC85 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Lsm1Q8VC85 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Lsm1Q8VC85 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Lsm1Q8VC85 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Lsm1Q8VC85 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Lsm1Q8VC85 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC15.57■□□□□ 0.08
Lsm1Q8VC85 Gm32996-201ENSMUST00000199828 1447 ntBASIC15.57■□□□□ 0.08
Lsm1Q8VC85 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
Lsm1Q8VC85 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Lsm1Q8VC85 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Lsm1Q8VC85 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Lsm1Q8VC85 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Lsm1Q8VC85 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
Lsm1Q8VC85 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC15.56■□□□□ 0.08
Lsm1Q8VC85 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Lsm1Q8VC85 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Lsm1Q8VC85 Gm42473-201ENSMUST00000201056 2291 ntBASIC15.56■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 41.5 ms