Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC17.98■□□□□ 0.47
Trim47Q8C0E3 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Trim47Q8C0E3 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim47Q8C0E3 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Trim47Q8C0E3 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC17.98■□□□□ 0.47
Trim47Q8C0E3 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
Trim47Q8C0E3 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim47Q8C0E3 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim47Q8C0E3 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim47Q8C0E3 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Trim47Q8C0E3 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim47Q8C0E3 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC17.98■□□□□ 0.47
Trim47Q8C0E3 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Trim47Q8C0E3 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Trim47Q8C0E3 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim47Q8C0E3 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim47Q8C0E3 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim47Q8C0E3 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim47Q8C0E3 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim47Q8C0E3 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Trim47Q8C0E3 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC17.97■□□□□ 0.47
Trim47Q8C0E3 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim47Q8C0E3 Gm15165-201ENSMUST00000118140 502 ntBASIC17.97■□□□□ 0.47
Trim47Q8C0E3 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim47Q8C0E3 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Trim47Q8C0E3 Gm27459-201ENSMUST00000184860 107 ntBASIC17.97■□□□□ 0.47
Trim47Q8C0E3 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC17.97■□□□□ 0.47
Trim47Q8C0E3 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC17.97■□□□□ 0.47
Trim47Q8C0E3 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim47Q8C0E3 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim47Q8C0E3 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Trim47Q8C0E3 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim47Q8C0E3 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim47Q8C0E3 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Trim47Q8C0E3 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim47Q8C0E3 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim47Q8C0E3 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Trim47Q8C0E3 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim47Q8C0E3 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
Trim47Q8C0E3 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim47Q8C0E3 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim47Q8C0E3 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trim47Q8C0E3 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC17.96■□□□□ 0.47
Trim47Q8C0E3 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trim47Q8C0E3 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trim47Q8C0E3 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trim47Q8C0E3 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Trim47Q8C0E3 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trim47Q8C0E3 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Trim47Q8C0E3 Gm7507-201ENSMUST00000183053 1008 ntBASIC17.96■□□□□ 0.47
Trim47Q8C0E3 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC17.96■□□□□ 0.47
Trim47Q8C0E3 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trim47Q8C0E3 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trim47Q8C0E3 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trim47Q8C0E3 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trim47Q8C0E3 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trim47Q8C0E3 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Trim47Q8C0E3 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Trim47Q8C0E3 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trim47Q8C0E3 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
Trim47Q8C0E3 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim47Q8C0E3 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim47Q8C0E3 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim47Q8C0E3 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim47Q8C0E3 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim47Q8C0E3 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim47Q8C0E3 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Trim47Q8C0E3 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Trim47Q8C0E3 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC17.95■□□□□ 0.46
Trim47Q8C0E3 Gm12644-201ENSMUST00000119935 606 ntBASIC17.95■□□□□ 0.46
Trim47Q8C0E3 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC17.95■□□□□ 0.46
Trim47Q8C0E3 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC17.95■□□□□ 0.46
Trim47Q8C0E3 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC17.95■□□□□ 0.46
Trim47Q8C0E3 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Trim47Q8C0E3 Gm26917-202ENSMUST00000192833 3329 ntBASIC17.95■□□□□ 0.46
Trim47Q8C0E3 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim47Q8C0E3 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Trim47Q8C0E3 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim47Q8C0E3 Gm6858-201ENSMUST00000208582 1468 ntBASIC17.95■□□□□ 0.46
Trim47Q8C0E3 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Trim47Q8C0E3 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim47Q8C0E3 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
Trim47Q8C0E3 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
Trim47Q8C0E3 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim47Q8C0E3 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim47Q8C0E3 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim47Q8C0E3 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Trim47Q8C0E3 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim47Q8C0E3 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC17.94■□□□□ 0.46
Trim47Q8C0E3 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC17.94■□□□□ 0.46
Trim47Q8C0E3 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim47Q8C0E3 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim47Q8C0E3 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC17.94■□□□□ 0.46
Trim47Q8C0E3 Cmtm5-203ENSMUST00000227441 610 ntBASIC17.94■□□□□ 0.46
Trim47Q8C0E3 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim47Q8C0E3 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC17.94■□□□□ 0.46
Trim47Q8C0E3 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim47Q8C0E3 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim47Q8C0E3 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim47Q8C0E3 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 23.8 ms