Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CtcfQ61164 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CtcfQ61164 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CtcfQ61164 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CtcfQ61164 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
CtcfQ61164 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC17.91■□□□□ 0.46
CtcfQ61164 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CtcfQ61164 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CtcfQ61164 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CtcfQ61164 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CtcfQ61164 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CtcfQ61164 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
CtcfQ61164 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CtcfQ61164 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CtcfQ61164 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
CtcfQ61164 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CtcfQ61164 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CtcfQ61164 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
CtcfQ61164 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CtcfQ61164 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CtcfQ61164 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
CtcfQ61164 Gm20472-201ENSMUST00000174403 1240 ntBASIC17.9■□□□□ 0.46
CtcfQ61164 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC17.9■□□□□ 0.46
CtcfQ61164 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC17.9■□□□□ 0.46
CtcfQ61164 Gm7370-201ENSMUST00000219471 767 ntBASIC17.9■□□□□ 0.46
CtcfQ61164 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CtcfQ61164 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC17.9■□□□□ 0.46
CtcfQ61164 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CtcfQ61164 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CtcfQ61164 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
CtcfQ61164 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC17.9■□□□□ 0.46
CtcfQ61164 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
CtcfQ61164 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
CtcfQ61164 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC17.89■□□□□ 0.45
CtcfQ61164 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CtcfQ61164 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CtcfQ61164 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC17.89■□□□□ 0.45
CtcfQ61164 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC17.89■□□□□ 0.45
CtcfQ61164 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CtcfQ61164 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CtcfQ61164 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC17.89■□□□□ 0.45
CtcfQ61164 AC135963.1-201ENSMUST00000211640 717 ntBASIC17.89■□□□□ 0.45
CtcfQ61164 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CtcfQ61164 AC112142.1-201ENSMUST00000228796 918 ntBASIC17.89■□□□□ 0.45
CtcfQ61164 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CtcfQ61164 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CtcfQ61164 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC17.89■□□□□ 0.45
CtcfQ61164 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CtcfQ61164 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CtcfQ61164 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
CtcfQ61164 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CtcfQ61164 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC17.89■□□□□ 0.45
CtcfQ61164 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CtcfQ61164 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CtcfQ61164 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
CtcfQ61164 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CtcfQ61164 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
CtcfQ61164 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CtcfQ61164 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
CtcfQ61164 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CtcfQ61164 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CtcfQ61164 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CtcfQ61164 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC17.88■□□□□ 0.45
CtcfQ61164 Gm21814-202ENSMUST00000203277 873 ntBASIC17.88■□□□□ 0.45
CtcfQ61164 Odf3b-204ENSMUST00000227834 930 ntBASIC17.88■□□□□ 0.45
CtcfQ61164 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CtcfQ61164 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CtcfQ61164 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CtcfQ61164 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC17.88■□□□□ 0.45
CtcfQ61164 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
CtcfQ61164 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CtcfQ61164 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CtcfQ61164 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
CtcfQ61164 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CtcfQ61164 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
CtcfQ61164 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CtcfQ61164 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CtcfQ61164 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
CtcfQ61164 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC17.87■□□□□ 0.45
CtcfQ61164 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
CtcfQ61164 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CtcfQ61164 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC17.87■□□□□ 0.45
CtcfQ61164 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC17.87■□□□□ 0.45
CtcfQ61164 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CtcfQ61164 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC17.87■□□□□ 0.45
CtcfQ61164 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CtcfQ61164 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CtcfQ61164 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CtcfQ61164 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CtcfQ61164 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
CtcfQ61164 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CtcfQ61164 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
CtcfQ61164 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC17.87■□□□□ 0.45
CtcfQ61164 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CtcfQ61164 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CtcfQ61164 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CtcfQ61164 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CtcfQ61164 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
CtcfQ61164 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CtcfQ61164 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 26.7 ms