Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim40Q3UWA4 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim40Q3UWA4 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trim40Q3UWA4 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Trim40Q3UWA4 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trim40Q3UWA4 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim40Q3UWA4 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim40Q3UWA4 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
Trim40Q3UWA4 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim40Q3UWA4 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim40Q3UWA4 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim40Q3UWA4 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trim40Q3UWA4 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trim40Q3UWA4 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim40Q3UWA4 Gm24841-201ENSMUST00000158676 357 ntBASIC15.29■□□□□ 0.04
Trim40Q3UWA4 Gm18025-201ENSMUST00000221733 862 ntBASIC15.29■□□□□ 0.04
Trim40Q3UWA4 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC15.29■□□□□ 0.04
Trim40Q3UWA4 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
Trim40Q3UWA4 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim40Q3UWA4 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim40Q3UWA4 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim40Q3UWA4 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim40Q3UWA4 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Trim40Q3UWA4 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim40Q3UWA4 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim40Q3UWA4 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trim40Q3UWA4 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC15.28■□□□□ 0.04
Trim40Q3UWA4 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim40Q3UWA4 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim40Q3UWA4 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
Trim40Q3UWA4 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Trim40Q3UWA4 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim40Q3UWA4 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trim40Q3UWA4 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trim40Q3UWA4 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trim40Q3UWA4 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Trim40Q3UWA4 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim40Q3UWA4 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
Trim40Q3UWA4 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim40Q3UWA4 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim40Q3UWA4 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trim40Q3UWA4 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trim40Q3UWA4 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trim40Q3UWA4 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Trim40Q3UWA4 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trim40Q3UWA4 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim40Q3UWA4 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC15.28■□□□□ 0.04
Trim40Q3UWA4 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim40Q3UWA4 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trim40Q3UWA4 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trim40Q3UWA4 Gm27000-201ENSMUST00000182943 842 ntBASIC15.28■□□□□ 0.04
Trim40Q3UWA4 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trim40Q3UWA4 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim40Q3UWA4 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim40Q3UWA4 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim40Q3UWA4 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim40Q3UWA4 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim40Q3UWA4 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim40Q3UWA4 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim40Q3UWA4 Fam208a-201ENSMUST00000022450 7590 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Trim40Q3UWA4 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC15.28■□□□□ 0.04
Trim40Q3UWA4 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trim40Q3UWA4 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim40Q3UWA4 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim40Q3UWA4 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim40Q3UWA4 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim40Q3UWA4 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim40Q3UWA4 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
Trim40Q3UWA4 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Trim40Q3UWA4 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim40Q3UWA4 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim40Q3UWA4 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
Trim40Q3UWA4 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC15.27■□□□□ 0.04
Trim40Q3UWA4 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC15.27■□□□□ 0.04
Trim40Q3UWA4 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim40Q3UWA4 Gm17661-201ENSMUST00000170317 270 ntBASIC15.27■□□□□ 0.04
Trim40Q3UWA4 Gm42545-201ENSMUST00000202755 922 ntBASIC15.27■□□□□ 0.04
Trim40Q3UWA4 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Trim40Q3UWA4 AC164629.5-201ENSMUST00000220387 632 ntBASIC15.27■□□□□ 0.04
Trim40Q3UWA4 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim40Q3UWA4 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Trim40Q3UWA4 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim40Q3UWA4 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trim40Q3UWA4 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Trim40Q3UWA4 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
Trim40Q3UWA4 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trim40Q3UWA4 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
Trim40Q3UWA4 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trim40Q3UWA4 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trim40Q3UWA4 Rab22a-201ENSMUST00000029024 7155 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trim40Q3UWA4 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trim40Q3UWA4 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trim40Q3UWA4 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC15.27■□□□□ 0.03
Trim40Q3UWA4 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
Trim40Q3UWA4 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trim40Q3UWA4 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim40Q3UWA4 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
Trim40Q3UWA4 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trim40Q3UWA4 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Trim40Q3UWA4 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC15.26■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms