Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Limch1Q3UH68 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Limch1Q3UH68 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Limch1Q3UH68 Gm11336-201ENSMUST00000118168 334 ntBASIC19.12■□□□□ 0.65
Limch1Q3UH68 Gm6623-201ENSMUST00000173570 544 ntBASIC19.12■□□□□ 0.65
Limch1Q3UH68 Gm27357-201ENSMUST00000183754 135 ntBASIC19.12■□□□□ 0.65
Limch1Q3UH68 Otx2os1-206ENSMUST00000228153 787 ntBASIC19.12■□□□□ 0.65
Limch1Q3UH68 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Limch1Q3UH68 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Limch1Q3UH68 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC19.12■□□□□ 0.65
Limch1Q3UH68 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Limch1Q3UH68 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Limch1Q3UH68 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC19.11■□□□□ 0.65
Limch1Q3UH68 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC19.11■□□□□ 0.65
Limch1Q3UH68 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Limch1Q3UH68 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Limch1Q3UH68 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Limch1Q3UH68 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Limch1Q3UH68 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Limch1Q3UH68 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
Limch1Q3UH68 Gm37722-201ENSMUST00000193757 208 ntBASIC19.11■□□□□ 0.65
Limch1Q3UH68 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Limch1Q3UH68 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Limch1Q3UH68 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Limch1Q3UH68 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Limch1Q3UH68 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Limch1Q3UH68 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
Limch1Q3UH68 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Limch1Q3UH68 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Limch1Q3UH68 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Limch1Q3UH68 Gm42918-201ENSMUST00000199249 1580 ntBASIC19.1■□□□□ 0.65
Limch1Q3UH68 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Limch1Q3UH68 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Limch1Q3UH68 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Limch1Q3UH68 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Limch1Q3UH68 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC19.1■□□□□ 0.65
Limch1Q3UH68 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC19.1■□□□□ 0.65
Limch1Q3UH68 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
Limch1Q3UH68 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Limch1Q3UH68 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Limch1Q3UH68 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC19.1■□□□□ 0.65
Limch1Q3UH68 Gm27742-201ENSMUST00000184667 60 ntBASIC19.1■□□□□ 0.65
Limch1Q3UH68 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Limch1Q3UH68 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
Limch1Q3UH68 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Limch1Q3UH68 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Limch1Q3UH68 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Limch1Q3UH68 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Limch1Q3UH68 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Limch1Q3UH68 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Limch1Q3UH68 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
Limch1Q3UH68 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Limch1Q3UH68 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Limch1Q3UH68 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Limch1Q3UH68 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
Limch1Q3UH68 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Limch1Q3UH68 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Limch1Q3UH68 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Limch1Q3UH68 Slc35b2-202ENSMUST00000223987 1766 ntBASIC19.09■□□□□ 0.65
Limch1Q3UH68 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Limch1Q3UH68 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Limch1Q3UH68 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
Limch1Q3UH68 Mir770-201ENSMUST00000103252 94 ntBASIC19.09■□□□□ 0.65
Limch1Q3UH68 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Limch1Q3UH68 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Limch1Q3UH68 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Limch1Q3UH68 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Limch1Q3UH68 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
Limch1Q3UH68 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Limch1Q3UH68 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Limch1Q3UH68 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Limch1Q3UH68 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Limch1Q3UH68 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Limch1Q3UH68 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Limch1Q3UH68 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Limch1Q3UH68 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Limch1Q3UH68 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Limch1Q3UH68 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Limch1Q3UH68 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Limch1Q3UH68 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Limch1Q3UH68 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Limch1Q3UH68 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
Limch1Q3UH68 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Limch1Q3UH68 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Limch1Q3UH68 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC19.08■□□□□ 0.64
Limch1Q3UH68 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Limch1Q3UH68 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
Limch1Q3UH68 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Limch1Q3UH68 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Limch1Q3UH68 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Limch1Q3UH68 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Limch1Q3UH68 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Limch1Q3UH68 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Limch1Q3UH68 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Limch1Q3UH68 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC19.07■□□□□ 0.64
Limch1Q3UH68 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Limch1Q3UH68 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Limch1Q3UH68 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Limch1Q3UH68 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Limch1Q3UH68 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 25.7 ms