Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Nkx3-1P97436 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Nkx3-1P97436 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Nkx3-1P97436 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Nkx3-1P97436 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Nkx3-1P97436 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Nkx3-1P97436 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Nkx3-1P97436 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Nkx3-1P97436 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Nkx3-1P97436 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Nkx3-1P97436 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Nkx3-1P97436 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Nkx3-1P97436 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Nkx3-1P97436 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Nkx3-1P97436 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Nkx3-1P97436 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Nkx3-1P97436 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Nkx3-1P97436 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
Nkx3-1P97436 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Nkx3-1P97436 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Nkx3-1P97436 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Nkx3-1P97436 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
Nkx3-1P97436 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC14.02□□□□□ -0.16
Nkx3-1P97436 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Nkx3-1P97436 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Nkx3-1P97436 Ddx41-204ENSMUST00000224765 2199 ntBASIC14.02□□□□□ -0.16
Nkx3-1P97436 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Nkx3-1P97436 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Nkx3-1P97436 Magi1-201ENSMUST00000055224 7007 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Nkx3-1P97436 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
Nkx3-1P97436 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Nkx3-1P97436 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC14.02□□□□□ -0.17
Nkx3-1P97436 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC14.02□□□□□ -0.17
Nkx3-1P97436 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Nkx3-1P97436 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC14.02□□□□□ -0.17
Nkx3-1P97436 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Nkx3-1P97436 AC132104.2-201ENSMUST00000215011 266 ntBASIC14.02□□□□□ -0.17
Nkx3-1P97436 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Nkx3-1P97436 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Nkx3-1P97436 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Nkx3-1P97436 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Nkx3-1P97436 Gm45244-201ENSMUST00000211328 2200 ntBASIC14.02□□□□□ -0.17
Nkx3-1P97436 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC14.02□□□□□ -0.17
Nkx3-1P97436 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Nkx3-1P97436 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Nkx3-1P97436 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Nkx3-1P97436 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Nkx3-1P97436 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Nkx3-1P97436 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Nkx3-1P97436 Slc35b2-202ENSMUST00000223987 1766 ntBASIC14.01□□□□□ -0.17
Nkx3-1P97436 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Nkx3-1P97436 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC14.01□□□□□ -0.17
Nkx3-1P97436 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Nkx3-1P97436 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Nkx3-1P97436 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Nkx3-1P97436 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Nkx3-1P97436 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Nkx3-1P97436 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Nkx3-1P97436 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Nkx3-1P97436 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Nkx3-1P97436 Gm12350-201ENSMUST00000121208 462 ntBASIC14.01□□□□□ -0.17
Nkx3-1P97436 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC14.01□□□□□ -0.17
Nkx3-1P97436 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Nkx3-1P97436 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Nkx3-1P97436 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Nkx3-1P97436 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Nkx3-1P97436 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Nkx3-1P97436 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Nkx3-1P97436 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Nkx3-1P97436 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Nkx3-1P97436 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Nkx3-1P97436 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC14.01□□□□□ -0.17
Nkx3-1P97436 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Nkx3-1P97436 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Nkx3-1P97436 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Nkx3-1P97436 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC14□□□□□ -0.17
Nkx3-1P97436 Myo15b-202ENSMUST00000093911 9340 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Nkx3-1P97436 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Nkx3-1P97436 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Nkx3-1P97436 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Nkx3-1P97436 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Nkx3-1P97436 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC14□□□□□ -0.17
Nkx3-1P97436 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Nkx3-1P97436 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Nkx3-1P97436 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC14□□□□□ -0.17
Nkx3-1P97436 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC14□□□□□ -0.17
Nkx3-1P97436 Gm7507-201ENSMUST00000183053 1008 ntBASIC14□□□□□ -0.17
Nkx3-1P97436 Gm37935-201ENSMUST00000192012 982 ntBASIC14□□□□□ -0.17
Nkx3-1P97436 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC14□□□□□ -0.17
Nkx3-1P97436 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC14□□□□□ -0.17
Nkx3-1P97436 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC14□□□□□ -0.17
Nkx3-1P97436 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Nkx3-1P97436 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC14□□□□□ -0.17
Nkx3-1P97436 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Nkx3-1P97436 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Nkx3-1P97436 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC14□□□□□ -0.17
Nkx3-1P97436 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC14□□□□□ -0.17
Nkx3-1P97436 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Nkx3-1P97436 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Nkx3-1P97436 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 24.1 ms