Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Hmgb1P63158 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Hmgb1P63158 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Hmgb1P63158 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Hmgb1P63158 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Hmgb1P63158 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Hmgb1P63158 Gm14464-201ENSMUST00000119658 1254 ntBASIC17.87■□□□□ 0.45
Hmgb1P63158 Gm26039-201ENSMUST00000158152 144 ntBASIC17.87■□□□□ 0.45
Hmgb1P63158 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Hmgb1P63158 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Hmgb1P63158 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Hmgb1P63158 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Hmgb1P63158 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Hmgb1P63158 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Hmgb1P63158 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Hmgb1P63158 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Hmgb1P63158 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC17.87■□□□□ 0.45
Hmgb1P63158 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Hmgb1P63158 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Hmgb1P63158 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Hmgb1P63158 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Hmgb1P63158 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Hmgb1P63158 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Hmgb1P63158 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Hmgb1P63158 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Hmgb1P63158 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Hmgb1P63158 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Hmgb1P63158 Mir5130-201ENSMUST00000175160 84 ntBASIC17.86■□□□□ 0.45
Hmgb1P63158 AC122351.1-201ENSMUST00000220467 126 ntBASIC17.86■□□□□ 0.45
Hmgb1P63158 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Hmgb1P63158 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC17.86■□□□□ 0.45
Hmgb1P63158 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Hmgb1P63158 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Hmgb1P63158 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
Hmgb1P63158 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
Hmgb1P63158 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC17.86■□□□□ 0.45
Hmgb1P63158 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Hmgb1P63158 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
Hmgb1P63158 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Hmgb1P63158 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
Hmgb1P63158 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Hmgb1P63158 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Hmgb1P63158 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Hmgb1P63158 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Hmgb1P63158 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Hmgb1P63158 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC17.85■□□□□ 0.45
Hmgb1P63158 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Hmgb1P63158 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC17.85■□□□□ 0.45
Hmgb1P63158 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC17.85■□□□□ 0.45
Hmgb1P63158 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Hmgb1P63158 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC17.85■□□□□ 0.45
Hmgb1P63158 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC17.85■□□□□ 0.45
Hmgb1P63158 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC17.85■□□□□ 0.45
Hmgb1P63158 Gm45058-201ENSMUST00000205810 766 ntBASIC17.85■□□□□ 0.45
Hmgb1P63158 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
Hmgb1P63158 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC17.85■□□□□ 0.45
Hmgb1P63158 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Hmgb1P63158 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Hmgb1P63158 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
Hmgb1P63158 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Hmgb1P63158 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
Hmgb1P63158 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC17.85■□□□□ 0.45
Hmgb1P63158 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Hmgb1P63158 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Hmgb1P63158 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Hmgb1P63158 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC17.84■□□□□ 0.45
Hmgb1P63158 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Hmgb1P63158 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC17.84■□□□□ 0.45
Hmgb1P63158 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Hmgb1P63158 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Hmgb1P63158 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Hmgb1P63158 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Hmgb1P63158 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Hmgb1P63158 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Hmgb1P63158 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC17.84■□□□□ 0.45
Hmgb1P63158 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Hmgb1P63158 Gm32996-201ENSMUST00000199828 1447 ntBASIC17.84■□□□□ 0.45
Hmgb1P63158 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Hmgb1P63158 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Hmgb1P63158 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Hmgb1P63158 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Hmgb1P63158 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC17.84■□□□□ 0.45
Hmgb1P63158 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC17.84■□□□□ 0.45
Hmgb1P63158 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
Hmgb1P63158 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
Hmgb1P63158 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Hmgb1P63158 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Hmgb1P63158 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
Hmgb1P63158 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Hmgb1P63158 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC17.84■□□□□ 0.45
Hmgb1P63158 Gm19430-201ENSMUST00000193847 2137 ntBASIC17.84■□□□□ 0.45
Hmgb1P63158 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Hmgb1P63158 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Hmgb1P63158 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Hmgb1P63158 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Hmgb1P63158 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Hmgb1P63158 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Hmgb1P63158 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
Hmgb1P63158 Nrxn1-216ENSMUST00000174331 6282 ntAPPRIS ALT1 TSL 5 BASIC17.83■□□□□ 0.45
Hmgb1P63158 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 26.1 ms