Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC18.92■□□□□ 0.62
Col1a1P11087 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Col1a1P11087 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Col1a1P11087 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Col1a1P11087 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Col1a1P11087 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Col1a1P11087 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC18.91■□□□□ 0.62
Col1a1P11087 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
Col1a1P11087 Gm13597-201ENSMUST00000121239 375 ntBASIC18.91■□□□□ 0.62
Col1a1P11087 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
Col1a1P11087 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC18.91■□□□□ 0.62
Col1a1P11087 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Col1a1P11087 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Col1a1P11087 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
Col1a1P11087 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Col1a1P11087 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Col1a1P11087 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Col1a1P11087 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Col1a1P11087 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC18.91■□□□□ 0.62
Col1a1P11087 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Col1a1P11087 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Col1a1P11087 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Col1a1P11087 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Col1a1P11087 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Col1a1P11087 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC18.91■□□□□ 0.62
Col1a1P11087 Gm13616-201ENSMUST00000120600 222 ntBASIC18.9■□□□□ 0.62
Col1a1P11087 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC18.9■□□□□ 0.62
Col1a1P11087 Gm44492-201ENSMUST00000197012 141 ntBASIC18.9■□□□□ 0.62
Col1a1P11087 Gm7787-201ENSMUST00000216858 688 ntBASIC18.9■□□□□ 0.62
Col1a1P11087 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Col1a1P11087 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col1a1P11087 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col1a1P11087 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Col1a1P11087 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col1a1P11087 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col1a1P11087 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Col1a1P11087 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col1a1P11087 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col1a1P11087 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col1a1P11087 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
Col1a1P11087 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Col1a1P11087 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col1a1P11087 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col1a1P11087 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Col1a1P11087 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col1a1P11087 Gm15358-201ENSMUST00000119249 520 ntBASIC18.9■□□□□ 0.62
Col1a1P11087 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Col1a1P11087 Gm17968-201ENSMUST00000194902 784 ntBASIC18.9■□□□□ 0.62
Col1a1P11087 Gm9682-201ENSMUST00000197505 556 ntBASIC18.9■□□□□ 0.62
Col1a1P11087 AC147366.1-201ENSMUST00000227671 852 ntBASIC18.9■□□□□ 0.62
Col1a1P11087 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col1a1P11087 Chchd10-201ENSMUST00000058906 939 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Col1a1P11087 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC18.9■□□□□ 0.62
Col1a1P11087 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Col1a1P11087 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
Col1a1P11087 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Col1a1P11087 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Col1a1P11087 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Col1a1P11087 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.62
Col1a1P11087 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Col1a1P11087 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
Col1a1P11087 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Col1a1P11087 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col1a1P11087 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col1a1P11087 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC18.89■□□□□ 0.61
Col1a1P11087 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col1a1P11087 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col1a1P11087 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
Col1a1P11087 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col1a1P11087 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC18.89■□□□□ 0.61
Col1a1P11087 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Col1a1P11087 Gm45612-201ENSMUST00000211320 160 ntBASIC18.89■□□□□ 0.61
Col1a1P11087 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col1a1P11087 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Col1a1P11087 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Col1a1P11087 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col1a1P11087 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC18.88■□□□□ 0.61
Col1a1P11087 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col1a1P11087 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col1a1P11087 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col1a1P11087 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col1a1P11087 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Col1a1P11087 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col1a1P11087 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col1a1P11087 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Col1a1P11087 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC18.88■□□□□ 0.61
Col1a1P11087 Gm18489-201ENSMUST00000172565 551 ntBASIC18.88■□□□□ 0.61
Col1a1P11087 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC18.88■□□□□ 0.61
Col1a1P11087 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC18.88■□□□□ 0.61
Col1a1P11087 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC18.88■□□□□ 0.61
Col1a1P11087 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC18.88■□□□□ 0.61
Col1a1P11087 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC18.88■□□□□ 0.61
Col1a1P11087 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Col1a1P11087 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col1a1P11087 Best4-ps-201ENSMUST00000129783 1380 ntBASIC18.88■□□□□ 0.61
Col1a1P11087 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Col1a1P11087 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Col1a1P11087 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col1a1P11087 Gm43702-201ENSMUST00000198772 2546 ntBASIC18.87■□□□□ 0.61
Col1a1P11087 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 60.6 ms