Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 AC153794.1-201ENSMUST00000169148 126 ntBASIC17.49■□□□□ 0.39
Vti1aO89116 Gm1818-201ENSMUST00000169406 1184 ntBASIC17.49■□□□□ 0.39
Vti1aO89116 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC17.49■□□□□ 0.39
Vti1aO89116 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
Vti1aO89116 Cmtm5-203ENSMUST00000227441 610 ntBASIC17.49■□□□□ 0.39
Vti1aO89116 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Vti1aO89116 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC17.49■□□□□ 0.39
Vti1aO89116 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Vti1aO89116 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC17.49■□□□□ 0.39
Vti1aO89116 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Vti1aO89116 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Vti1aO89116 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Vti1aO89116 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Vti1aO89116 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC17.48■□□□□ 0.39
Vti1aO89116 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Vti1aO89116 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Vti1aO89116 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
Vti1aO89116 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
Vti1aO89116 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Vti1aO89116 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Vti1aO89116 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Vti1aO89116 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Vti1aO89116 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Vti1aO89116 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC17.48■□□□□ 0.39
Vti1aO89116 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Vti1aO89116 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC17.48■□□□□ 0.39
Vti1aO89116 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC17.48■□□□□ 0.39
Vti1aO89116 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Vti1aO89116 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Vti1aO89116 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Vti1aO89116 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Vti1aO89116 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Vti1aO89116 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Vti1aO89116 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Vti1aO89116 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Vti1aO89116 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Vti1aO89116 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Vti1aO89116 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Vti1aO89116 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Vti1aO89116 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Vti1aO89116 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Vti1aO89116 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
Vti1aO89116 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC17.47■□□□□ 0.39
Vti1aO89116 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC17.47■□□□□ 0.39
Vti1aO89116 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Vti1aO89116 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Vti1aO89116 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC17.47■□□□□ 0.39
Vti1aO89116 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC17.47■□□□□ 0.39
Vti1aO89116 Gm5867-201ENSMUST00000063197 592 ntBASIC17.47■□□□□ 0.39
Vti1aO89116 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Vti1aO89116 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Vti1aO89116 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Vti1aO89116 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Vti1aO89116 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Vti1aO89116 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Vti1aO89116 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Vti1aO89116 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Vti1aO89116 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC17.46■□□□□ 0.39
Vti1aO89116 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC17.46■□□□□ 0.39
Vti1aO89116 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Vti1aO89116 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Vti1aO89116 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Vti1aO89116 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
Vti1aO89116 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC17.46■□□□□ 0.39
Vti1aO89116 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
Vti1aO89116 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Vti1aO89116 Zfp264-201ENSMUST00000208656 1563 ntBASIC17.46■□□□□ 0.39
Vti1aO89116 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
Vti1aO89116 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Vti1aO89116 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Vti1aO89116 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC17.46■□□□□ 0.39
Vti1aO89116 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Vti1aO89116 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Vti1aO89116 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
Vti1aO89116 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
Vti1aO89116 Gm36858-201ENSMUST00000194501 2391 ntBASIC17.46■□□□□ 0.39
Vti1aO89116 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Vti1aO89116 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Vti1aO89116 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Vti1aO89116 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Vti1aO89116 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC17.45■□□□□ 0.38
Vti1aO89116 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Vti1aO89116 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC17.45■□□□□ 0.38
Vti1aO89116 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Vti1aO89116 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Vti1aO89116 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Vti1aO89116 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC17.45■□□□□ 0.38
Vti1aO89116 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Vti1aO89116 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Vti1aO89116 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Vti1aO89116 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Vti1aO89116 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Vti1aO89116 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC17.45■□□□□ 0.38
Vti1aO89116 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Vti1aO89116 Ddx41-204ENSMUST00000224765 2199 ntBASIC17.45■□□□□ 0.38
Vti1aO89116 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Vti1aO89116 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Vti1aO89116 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Vti1aO89116 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Vti1aO89116 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC17.44■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 39.8 ms