Protein–RNA interactions for Protein: E0CXC2

Gm28043, E3 ubiquitin-protein ligase RNF8, mousemouse

Predictions only

Length 719 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Gm28043E0CXC2 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Gm28043E0CXC2 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Gm28043E0CXC2 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Gm28043E0CXC2 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Gm28043E0CXC2 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC16.34■□□□□ 0.21
Gm28043E0CXC2 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Gm28043E0CXC2 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Gm28043E0CXC2 Tle1-203ENSMUST00000074216 4369 ntAPPRIS ALT1 TSL 5 BASIC16.33■□□□□ 0.21
Gm28043E0CXC2 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Gm28043E0CXC2 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Gm28043E0CXC2 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Gm28043E0CXC2 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Gm28043E0CXC2 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Gm28043E0CXC2 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Gm28043E0CXC2 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Gm28043E0CXC2 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Gm28043E0CXC2 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
Gm28043E0CXC2 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Gm28043E0CXC2 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Gm28043E0CXC2 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
Gm28043E0CXC2 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC16.33■□□□□ 0.2
Gm28043E0CXC2 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Gm28043E0CXC2 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Gm28043E0CXC2 Gm43353-201ENSMUST00000199224 1295 ntBASIC16.33■□□□□ 0.2
Gm28043E0CXC2 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC16.33■□□□□ 0.2
Gm28043E0CXC2 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Gm28043E0CXC2 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Gm28043E0CXC2 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Gm28043E0CXC2 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Gm28043E0CXC2 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Gm28043E0CXC2 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Gm28043E0CXC2 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Gm28043E0CXC2 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Gm28043E0CXC2 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Gm28043E0CXC2 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Gm28043E0CXC2 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC16.32■□□□□ 0.2
Gm28043E0CXC2 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Gm28043E0CXC2 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Gm28043E0CXC2 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Gm28043E0CXC2 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Gm28043E0CXC2 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Gm28043E0CXC2 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Gm28043E0CXC2 Zfp316-202ENSMUST00000161448 6891 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Gm28043E0CXC2 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Gm28043E0CXC2 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Gm28043E0CXC2 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Gm28043E0CXC2 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Gm28043E0CXC2 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Gm28043E0CXC2 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Gm28043E0CXC2 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Gm28043E0CXC2 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Gm28043E0CXC2 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Gm28043E0CXC2 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Gm28043E0CXC2 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Gm28043E0CXC2 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Gm28043E0CXC2 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC16.31■□□□□ 0.2
Gm28043E0CXC2 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Gm28043E0CXC2 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Gm28043E0CXC2 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Gm28043E0CXC2 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Gm28043E0CXC2 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Gm28043E0CXC2 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Gm28043E0CXC2 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Gm28043E0CXC2 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Gm28043E0CXC2 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Gm28043E0CXC2 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Gm28043E0CXC2 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC16.31■□□□□ 0.2
Gm28043E0CXC2 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Gm28043E0CXC2 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Gm28043E0CXC2 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Gm28043E0CXC2 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Gm28043E0CXC2 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Gm28043E0CXC2 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Gm28043E0CXC2 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC16.3■□□□□ 0.2
Gm28043E0CXC2 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Gm28043E0CXC2 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Gm28043E0CXC2 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC16.3■□□□□ 0.2
Gm28043E0CXC2 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Gm28043E0CXC2 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Gm28043E0CXC2 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Gm28043E0CXC2 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Gm28043E0CXC2 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Gm28043E0CXC2 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Gm28043E0CXC2 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Gm28043E0CXC2 Tacc1-202ENSMUST00000084512 6471 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Gm28043E0CXC2 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC16.3■□□□□ 0.2
Gm28043E0CXC2 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Gm28043E0CXC2 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Gm28043E0CXC2 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC16.3■□□□□ 0.2
Gm28043E0CXC2 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC16.3■□□□□ 0.2
Gm28043E0CXC2 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC16.3■□□□□ 0.2
Gm28043E0CXC2 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC16.3■□□□□ 0.2
Gm28043E0CXC2 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Gm28043E0CXC2 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Gm28043E0CXC2 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Gm28043E0CXC2 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Gm28043E0CXC2 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Gm28043E0CXC2 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Gm28043E0CXC2 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Gm28043E0CXC2 Mast3-201ENSMUST00000166004 5305 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms