Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Pcdhgb8A0A140LI48 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Pcdhgb8A0A140LI48 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
Pcdhgb8A0A140LI48 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Pcdhgb8A0A140LI48 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Pcdhgb8A0A140LI48 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Pcdhgb8A0A140LI48 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Pcdhgb8A0A140LI48 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Pcdhgb8A0A140LI48 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC14.73□□□□□ -0.05
Pcdhgb8A0A140LI48 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Pcdhgb8A0A140LI48 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Pcdhgb8A0A140LI48 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Pcdhgb8A0A140LI48 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
Pcdhgb8A0A140LI48 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Pcdhgb8A0A140LI48 Gm37820-201ENSMUST00000194021 2147 ntBASIC14.72□□□□□ -0.05
Pcdhgb8A0A140LI48 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
Pcdhgb8A0A140LI48 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Pcdhgb8A0A140LI48 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Pcdhgb8A0A140LI48 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Pcdhgb8A0A140LI48 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC14.72□□□□□ -0.05
Pcdhgb8A0A140LI48 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
Pcdhgb8A0A140LI48 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Pcdhgb8A0A140LI48 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC14.72□□□□□ -0.05
Pcdhgb8A0A140LI48 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
Pcdhgb8A0A140LI48 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Pcdhgb8A0A140LI48 Gm43353-201ENSMUST00000199224 1295 ntBASIC14.72□□□□□ -0.05
Pcdhgb8A0A140LI48 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Pcdhgb8A0A140LI48 Gm45058-201ENSMUST00000205810 766 ntBASIC14.72□□□□□ -0.05
Pcdhgb8A0A140LI48 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC14.72□□□□□ -0.05
Pcdhgb8A0A140LI48 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Pcdhgb8A0A140LI48 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Pcdhgb8A0A140LI48 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Pcdhgb8A0A140LI48 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Pcdhgb8A0A140LI48 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Pcdhgb8A0A140LI48 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Pcdhgb8A0A140LI48 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Pcdhgb8A0A140LI48 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Pcdhgb8A0A140LI48 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Pcdhgb8A0A140LI48 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Pcdhgb8A0A140LI48 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Pcdhgb8A0A140LI48 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Pcdhgb8A0A140LI48 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC14.71□□□□□ -0.05
Pcdhgb8A0A140LI48 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Pcdhgb8A0A140LI48 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
Pcdhgb8A0A140LI48 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Pcdhgb8A0A140LI48 Dlc1-203ENSMUST00000098826 6241 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Pcdhgb8A0A140LI48 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Pcdhgb8A0A140LI48 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Pcdhgb8A0A140LI48 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
Pcdhgb8A0A140LI48 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Pcdhgb8A0A140LI48 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC14.71□□□□□ -0.05
Pcdhgb8A0A140LI48 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
Pcdhgb8A0A140LI48 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Pcdhgb8A0A140LI48 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Pcdhgb8A0A140LI48 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC14.71□□□□□ -0.05
Pcdhgb8A0A140LI48 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Pcdhgb8A0A140LI48 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Pcdhgb8A0A140LI48 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC14.71□□□□□ -0.05
Pcdhgb8A0A140LI48 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC14.71□□□□□ -0.05
Pcdhgb8A0A140LI48 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Pcdhgb8A0A140LI48 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Pcdhgb8A0A140LI48 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Pcdhgb8A0A140LI48 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Pcdhgb8A0A140LI48 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Pcdhgb8A0A140LI48 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Pcdhgb8A0A140LI48 Ralgapa1-201ENSMUST00000085385 7901 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Pcdhgb8A0A140LI48 Camta1-202ENSMUST00000097774 8533 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
Pcdhgb8A0A140LI48 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Pcdhgb8A0A140LI48 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.06
Pcdhgb8A0A140LI48 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
Pcdhgb8A0A140LI48 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.06
Pcdhgb8A0A140LI48 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.06
Pcdhgb8A0A140LI48 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Pcdhgb8A0A140LI48 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Pcdhgb8A0A140LI48 Ptprs-211ENSMUST00000223859 5588 ntBASIC14.71□□□□□ -0.06
Pcdhgb8A0A140LI48 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Pcdhgb8A0A140LI48 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Pcdhgb8A0A140LI48 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
Pcdhgb8A0A140LI48 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
Pcdhgb8A0A140LI48 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Pcdhgb8A0A140LI48 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
Pcdhgb8A0A140LI48 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Pcdhgb8A0A140LI48 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Pcdhgb8A0A140LI48 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Pcdhgb8A0A140LI48 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Pcdhgb8A0A140LI48 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Pcdhgb8A0A140LI48 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
Pcdhgb8A0A140LI48 Mir8112-201ENSMUST00000184382 131 ntBASIC14.7□□□□□ -0.06
Pcdhgb8A0A140LI48 Gm37025-201ENSMUST00000195159 829 ntBASIC14.7□□□□□ -0.06
Pcdhgb8A0A140LI48 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Pcdhgb8A0A140LI48 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Pcdhgb8A0A140LI48 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC14.7□□□□□ -0.06
Pcdhgb8A0A140LI48 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Pcdhgb8A0A140LI48 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Pcdhgb8A0A140LI48 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Pcdhgb8A0A140LI48 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Pcdhgb8A0A140LI48 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Pcdhgb8A0A140LI48 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Pcdhgb8A0A140LI48 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Pcdhgb8A0A140LI48 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC14.7□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms