Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 RNU6-1088P-201ENST00000516850 104 ntBASIC4.28□□□□□ -1.72
PCIF1Q9H4Z3 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
PCIF1Q9H4Z3 AC090115.3-201ENST00000553218 849 ntBASIC4.28□□□□□ -1.72
PCIF1Q9H4Z3 AL355836.1-201ENST00000555951 870 ntBASIC4.28□□□□□ -1.72
PCIF1Q9H4Z3 AC106782.4-201ENST00000568264 210 ntBASIC4.28□□□□□ -1.72
PCIF1Q9H4Z3 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC4.28□□□□□ -1.72
PCIF1Q9H4Z3 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC4.28□□□□□ -1.72
PCIF1Q9H4Z3 AL360181.4-201ENST00000621752 134 ntBASIC4.28□□□□□ -1.72
PCIF1Q9H4Z3 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
PCIF1Q9H4Z3 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.28□□□□□ -1.72
PCIF1Q9H4Z3 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
PCIF1Q9H4Z3 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC4.28□□□□□ -1.72
PCIF1Q9H4Z3 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
PCIF1Q9H4Z3 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
PCIF1Q9H4Z3 AL136964.1-201ENST00000622038 2990 ntBASIC4.28□□□□□ -1.72
PCIF1Q9H4Z3 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
PCIF1Q9H4Z3 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC4.28□□□□□ -1.73
PCIF1Q9H4Z3 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 RNU5A-1-201ENST00000362698 116 ntBASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 SNORD113-7-201ENST00000363762 77 ntBASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 RNU6-173P-201ENST00000364215 104 ntBASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 AC004552.1-201ENST00000419089 348 ntBASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 AL669831.1-202ENST00000428504 417 ntBASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 AC087650.1-201ENST00000431445 468 ntBASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 NDUFA5P4-201ENST00000436704 385 ntBASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 GTF2IP13-201ENST00000438487 386 ntBASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 RPS24P6-201ENST00000452670 400 ntBASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 RPL5P30-201ENST00000465511 891 ntBASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 RPS26P3-201ENST00000470205 348 ntBASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 TRBV1-201ENST00000476502 284 ntBASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 RPL7P43-201ENST00000478876 753 ntBASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 AC090543.2-201ENST00000483963 348 ntBASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 AC004057.1-201ENST00000485827 348 ntBASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 AL049874.1-201ENST00000489560 388 ntBASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 MTCO1P29-201ENST00000496868 288 ntBASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 HIGD1AP13-201ENST00000509878 289 ntBASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 MEG8-215ENST00000555354 469 ntTSL 3 BASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 POLR3GP2-201ENST00000588366 668 ntBASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 AL133255.1-201ENST00000606374 441 ntBASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 AC022893.3-201ENST00000607665 437 ntBASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
PCIF1Q9H4Z3 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.26□□□□□ -1.73
PCIF1Q9H4Z3 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
PCIF1Q9H4Z3 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
PCIF1Q9H4Z3 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
PCIF1Q9H4Z3 RNU6-1013P-201ENST00000384180 107 ntBASIC4.26□□□□□ -1.73
PCIF1Q9H4Z3 EIF4E2P1-201ENST00000393781 255 ntBASIC4.26□□□□□ -1.73
PCIF1Q9H4Z3 AL139397.2-201ENST00000404529 772 ntBASIC4.26□□□□□ -1.73
PCIF1Q9H4Z3 PPIAP31-201ENST00000405422 495 ntBASIC4.26□□□□□ -1.73
PCIF1Q9H4Z3 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC4.26□□□□□ -1.73
PCIF1Q9H4Z3 AC005019.1-201ENST00000436455 431 ntBASIC4.26□□□□□ -1.73
PCIF1Q9H4Z3 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC4.26□□□□□ -1.73
PCIF1Q9H4Z3 AL353748.1-201ENST00000440753 474 ntBASIC4.26□□□□□ -1.73
PCIF1Q9H4Z3 PRDX3P3-201ENST00000447765 522 ntBASIC4.26□□□□□ -1.73
PCIF1Q9H4Z3 AL118496.2-201ENST00000448300 230 ntBASIC4.26□□□□□ -1.73
PCIF1Q9H4Z3 RNU2-69P-201ENST00000516061 100 ntBASIC4.26□□□□□ -1.73
PCIF1Q9H4Z3 Y_RNA.682-201ENST00000516457 100 ntBASIC4.26□□□□□ -1.73
PCIF1Q9H4Z3 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC4.26□□□□□ -1.73
PCIF1Q9H4Z3 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC4.26□□□□□ -1.73
PCIF1Q9H4Z3 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
PCIF1Q9H4Z3 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC4.26□□□□□ -1.73
PCIF1Q9H4Z3 TOMM20P2-201ENST00000540082 421 ntBASIC4.26□□□□□ -1.73
PCIF1Q9H4Z3 AC135001.1-201ENST00000544546 283 ntBASIC4.26□□□□□ -1.73
PCIF1Q9H4Z3 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC4.26□□□□□ -1.73
PCIF1Q9H4Z3 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC4.26□□□□□ -1.73
PCIF1Q9H4Z3 MIR3160-1-201ENST00000577972 85 ntBASIC4.26□□□□□ -1.73
PCIF1Q9H4Z3 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC4.26□□□□□ -1.73
PCIF1Q9H4Z3 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC4.26□□□□□ -1.73
PCIF1Q9H4Z3 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC4.26□□□□□ -1.73
PCIF1Q9H4Z3 ATP1B3P1-201ENST00000605365 821 ntBASIC4.26□□□□□ -1.73
PCIF1Q9H4Z3 OR4G2P-202ENST00000641004 1759 ntBASIC4.26□□□□□ -1.73
PCIF1Q9H4Z3 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
PCIF1Q9H4Z3 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
PCIF1Q9H4Z3 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
PCIF1Q9H4Z3 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
PCIF1Q9H4Z3 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.26□□□□□ -1.73
PCIF1Q9H4Z3 SDAD1P2-201ENST00000441308 2028 ntBASIC4.26□□□□□ -1.73
PCIF1Q9H4Z3 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
PCIF1Q9H4Z3 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
PCIF1Q9H4Z3 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
PCIF1Q9H4Z3 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
PCIF1Q9H4Z3 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC4.25□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 98.3 ms