Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 RPS29P27-201ENST00000463711 170 ntBASIC3.95□□□□□ -1.78
CCDC140Q96MF4 RN7SL443P-201ENST00000464331 290 ntBASIC3.95□□□□□ -1.78
CCDC140Q96MF4 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.95□□□□□ -1.78
CCDC140Q96MF4 AC084357.1-201ENST00000473404 255 ntBASIC3.95□□□□□ -1.78
CCDC140Q96MF4 RPL7AP6-201ENST00000477943 801 ntBASIC3.95□□□□□ -1.78
CCDC140Q96MF4 RPS29P20-201ENST00000489592 171 ntBASIC3.95□□□□□ -1.78
CCDC140Q96MF4 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC3.95□□□□□ -1.78
CCDC140Q96MF4 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC3.95□□□□□ -1.78
CCDC140Q96MF4 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC3.95□□□□□ -1.78
CCDC140Q96MF4 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC3.95□□□□□ -1.78
CCDC140Q96MF4 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.95□□□□□ -1.78
CCDC140Q96MF4 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC3.95□□□□□ -1.78
CCDC140Q96MF4 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.95□□□□□ -1.78
CCDC140Q96MF4 AC016727.2-201ENST00000603988 621 ntBASIC3.95□□□□□ -1.78
CCDC140Q96MF4 AC009318.2-201ENST00000610917 651 ntBASIC3.95□□□□□ -1.78
CCDC140Q96MF4 AL138825.1-201ENST00000618587 192 ntBASIC3.95□□□□□ -1.78
CCDC140Q96MF4 AC007792.1-201ENST00000623023 402 ntBASIC3.95□□□□□ -1.78
CCDC140Q96MF4 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC3.95□□□□□ -1.78
CCDC140Q96MF4 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC140Q96MF4 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC3.95□□□□□ -1.78
CCDC140Q96MF4 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC3.95□□□□□ -1.78
CCDC140Q96MF4 MED23-203ENST00000368058 4576 ntTSL 5 BASIC3.95□□□□□ -1.78
CCDC140Q96MF4 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC140Q96MF4 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC3.95□□□□□ -1.78
CCDC140Q96MF4 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC140Q96MF4 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
CCDC140Q96MF4 LCMT1-AS2-202ENST00000565214 5666 ntBASIC3.95□□□□□ -1.78
CCDC140Q96MF4 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
CCDC140Q96MF4 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC140Q96MF4 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.94□□□□□ -1.78
CCDC140Q96MF4 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC3.94□□□□□ -1.78
CCDC140Q96MF4 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC3.94□□□□□ -1.78
CCDC140Q96MF4 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC3.94□□□□□ -1.78
CCDC140Q96MF4 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC140Q96MF4 SNORA74A-201ENST00000364089 198 ntBASIC3.94□□□□□ -1.78
CCDC140Q96MF4 RNU6-702P-201ENST00000364982 107 ntBASIC3.94□□□□□ -1.78
CCDC140Q96MF4 BTF3L4P2-201ENST00000392798 346 ntBASIC3.94□□□□□ -1.78
CCDC140Q96MF4 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC140Q96MF4 RPS29P13-201ENST00000402041 169 ntBASIC3.94□□□□□ -1.78
CCDC140Q96MF4 EIF4EBP2P3-201ENST00000403144 334 ntBASIC3.94□□□□□ -1.78
CCDC140Q96MF4 RNU6ATAC21P-201ENST00000408656 126 ntBASIC3.94□□□□□ -1.78
CCDC140Q96MF4 MIR1252-201ENST00000408861 65 ntBASIC3.94□□□□□ -1.78
CCDC140Q96MF4 AC114482.1-201ENST00000418010 247 ntBASIC3.94□□□□□ -1.78
CCDC140Q96MF4 DDX39BP1-205ENST00000422507 192 ntBASIC3.94□□□□□ -1.78
CCDC140Q96MF4 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC3.94□□□□□ -1.78
CCDC140Q96MF4 AL139148.1-201ENST00000427122 680 ntBASIC3.94□□□□□ -1.78
CCDC140Q96MF4 AL591043.1-201ENST00000432461 424 ntBASIC3.94□□□□□ -1.78
CCDC140Q96MF4 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC140Q96MF4 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC140Q96MF4 AC124916.1-201ENST00000444020 547 ntBASIC3.94□□□□□ -1.78
CCDC140Q96MF4 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC140Q96MF4 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.94□□□□□ -1.78
CCDC140Q96MF4 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.94□□□□□ -1.78
CCDC140Q96MF4 AL132838.2-201ENST00000492041 314 ntBASIC3.94□□□□□ -1.78
CCDC140Q96MF4 ENPP7P11-201ENST00000505915 627 ntBASIC3.94□□□□□ -1.78
CCDC140Q96MF4 SNORA40.14-201ENST00000516543 86 ntBASIC3.94□□□□□ -1.78
CCDC140Q96MF4 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC140Q96MF4 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC3.94□□□□□ -1.78
CCDC140Q96MF4 AL110118.1-201ENST00000553543 400 ntBASIC3.94□□□□□ -1.78
CCDC140Q96MF4 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC140Q96MF4 MIR5701-3-201ENST00000578890 82 ntBASIC3.94□□□□□ -1.78
CCDC140Q96MF4 MIR5701-1-201ENST00000585138 82 ntBASIC3.94□□□□□ -1.78
CCDC140Q96MF4 Z98751.3-201ENST00000604447 521 ntBASIC3.94□□□□□ -1.78
CCDC140Q96MF4 AC090425.1-201ENST00000610007 140 ntBASIC3.94□□□□□ -1.78
CCDC140Q96MF4 MIR5701-2-201ENST00000615634 82 ntBASIC3.94□□□□□ -1.78
CCDC140Q96MF4 MIR6719-201ENST00000622428 87 ntBASIC3.94□□□□□ -1.78
CCDC140Q96MF4 AC048347.1-201ENST00000624621 427 ntBASIC3.94□□□□□ -1.78
CCDC140Q96MF4 ST7-221ENST00000465133 2155 ntTSL 5 BASIC3.94□□□□□ -1.78
CCDC140Q96MF4 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC3.94□□□□□ -1.78
CCDC140Q96MF4 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC140Q96MF4 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC3.94□□□□□ -1.78
CCDC140Q96MF4 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC3.94□□□□□ -1.78
CCDC140Q96MF4 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC140Q96MF4 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC3.94□□□□□ -1.78
CCDC140Q96MF4 SCARNA15-201ENST00000607520 4325 ntBASIC3.94□□□□□ -1.78
CCDC140Q96MF4 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
CCDC140Q96MF4 MUC2-202ENST00000613187 4845 ntBASIC3.93□□□□□ -1.78
CCDC140Q96MF4 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC3.93□□□□□ -1.78
CCDC140Q96MF4 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC140Q96MF4 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC140Q96MF4 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC140Q96MF4 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC3.93□□□□□ -1.78
CCDC140Q96MF4 MTND5P27-201ENST00000428871 1720 ntBASIC3.93□□□□□ -1.78
CCDC140Q96MF4 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC140Q96MF4 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC3.93□□□□□ -1.78
CCDC140Q96MF4 SNORA51.11-201ENST00000384442 131 ntBASIC3.93□□□□□ -1.78
CCDC140Q96MF4 MIR518D-201ENST00000385014 87 ntBASIC3.93□□□□□ -1.78
CCDC140Q96MF4 MIR628-201ENST00000385229 95 ntBASIC3.93□□□□□ -1.78
CCDC140Q96MF4 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
CCDC140Q96MF4 SNORA69.1-201ENST00000390904 137 ntBASIC3.93□□□□□ -1.78
CCDC140Q96MF4 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.93□□□□□ -1.78
CCDC140Q96MF4 U3.36-201ENST00000408418 213 ntBASIC3.93□□□□□ -1.78
CCDC140Q96MF4 SNORA77-201ENST00000408716 125 ntBASIC3.93□□□□□ -1.78
CCDC140Q96MF4 RN7SKP100-201ENST00000411258 284 ntBASIC3.93□□□□□ -1.78
CCDC140Q96MF4 RPS29P9-201ENST00000440360 171 ntBASIC3.93□□□□□ -1.78
CCDC140Q96MF4 DYNLT3P2-201ENST00000442517 295 ntBASIC3.93□□□□□ -1.78
CCDC140Q96MF4 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC140Q96MF4 RN7SL610P-201ENST00000463845 291 ntBASIC3.93□□□□□ -1.78
CCDC140Q96MF4 RPS18P6-201ENST00000476880 458 ntBASIC3.93□□□□□ -1.78
CCDC140Q96MF4 RN7SL441P-201ENST00000492388 296 ntBASIC3.93□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 124.3 ms