Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 MTND5P30-201ENST00000452896 1731 ntBASIC2.67□□□□□ -1.98
ZNF540Q8NDQ6 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC2.67□□□□□ -1.98
ZNF540Q8NDQ6 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
ZNF540Q8NDQ6 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.66□□□□□ -1.98
ZNF540Q8NDQ6 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.66□□□□□ -1.98
ZNF540Q8NDQ6 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.66□□□□□ -1.98
ZNF540Q8NDQ6 RNU4-68P-201ENST00000364314 141 ntBASIC2.66□□□□□ -1.98
ZNF540Q8NDQ6 RNU4-28P-201ENST00000364739 141 ntBASIC2.66□□□□□ -1.98
ZNF540Q8NDQ6 SNORD116.1-201ENST00000365628 92 ntBASIC2.66□□□□□ -1.98
ZNF540Q8NDQ6 RNU6-920P-201ENST00000410926 92 ntBASIC2.66□□□□□ -1.98
ZNF540Q8NDQ6 RPL22P18-201ENST00000417197 377 ntBASIC2.66□□□□□ -1.98
ZNF540Q8NDQ6 USP9YP26-201ENST00000421008 661 ntBASIC2.66□□□□□ -1.98
ZNF540Q8NDQ6 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC2.66□□□□□ -1.98
ZNF540Q8NDQ6 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC2.66□□□□□ -1.98
ZNF540Q8NDQ6 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC2.66□□□□□ -1.98
ZNF540Q8NDQ6 RPL35AP12-201ENST00000425362 338 ntBASIC2.66□□□□□ -1.98
ZNF540Q8NDQ6 ELOCP14-201ENST00000428070 331 ntBASIC2.66□□□□□ -1.98
ZNF540Q8NDQ6 ELOCP7-201ENST00000439968 331 ntBASIC2.66□□□□□ -1.98
ZNF540Q8NDQ6 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC2.66□□□□□ -1.98
ZNF540Q8NDQ6 AC011753.1-201ENST00000451001 220 ntBASIC2.66□□□□□ -1.98
ZNF540Q8NDQ6 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC2.66□□□□□ -1.98
ZNF540Q8NDQ6 AL139109.1-201ENST00000455491 297 ntBASIC2.66□□□□□ -1.98
ZNF540Q8NDQ6 SNORA59A-201ENST00000459326 152 ntBASIC2.66□□□□□ -1.98
ZNF540Q8NDQ6 RPS29P20-201ENST00000489592 171 ntBASIC2.66□□□□□ -1.98
ZNF540Q8NDQ6 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC2.66□□□□□ -1.98
ZNF540Q8NDQ6 AC091826.1-201ENST00000514065 313 ntBASIC2.66□□□□□ -1.98
ZNF540Q8NDQ6 SNORD19.2-201ENST00000516978 73 ntBASIC2.66□□□□□ -1.98
ZNF540Q8NDQ6 AC025881.1-201ENST00000518851 512 ntBASIC2.66□□□□□ -1.98
ZNF540Q8NDQ6 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC2.66□□□□□ -1.98
ZNF540Q8NDQ6 DUXAP5-201ENST00000529668 529 ntBASIC2.66□□□□□ -1.98
ZNF540Q8NDQ6 AC023538.1-201ENST00000534576 736 ntBASIC2.66□□□□□ -1.98
ZNF540Q8NDQ6 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC2.66□□□□□ -1.98
ZNF540Q8NDQ6 AC093012.1-202ENST00000549403 582 ntBASIC2.66□□□□□ -1.98
ZNF540Q8NDQ6 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC2.66□□□□□ -1.98
ZNF540Q8NDQ6 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC2.66□□□□□ -1.98
ZNF540Q8NDQ6 DUXAP3-201ENST00000603616 594 ntBASIC2.66□□□□□ -1.98
ZNF540Q8NDQ6 ATP1B3P1-201ENST00000605365 821 ntBASIC2.66□□□□□ -1.98
ZNF540Q8NDQ6 AC007349.4-201ENST00000608114 532 ntBASIC2.66□□□□□ -1.98
ZNF540Q8NDQ6 AC004908.2-201ENST00000609090 574 ntBASIC2.66□□□□□ -1.98
ZNF540Q8NDQ6 AC019226.2-201ENST00000625973 424 ntBASIC2.66□□□□□ -1.98
ZNF540Q8NDQ6 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.66□□□□□ -1.98
ZNF540Q8NDQ6 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC2.66□□□□□ -1.98
ZNF540Q8NDQ6 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.66□□□□□ -1.98
ZNF540Q8NDQ6 AC099786.3-201ENST00000565735 1410 ntBASIC2.66□□□□□ -1.98
ZNF540Q8NDQ6 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
ZNF540Q8NDQ6 RNU6-289P-201ENST00000364093 107 ntBASIC2.65□□□□□ -1.99
ZNF540Q8NDQ6 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC2.65□□□□□ -1.99
ZNF540Q8NDQ6 RNU1-52P-201ENST00000384190 164 ntBASIC2.65□□□□□ -1.99
ZNF540Q8NDQ6 MIR512-1-201ENST00000384913 84 ntBASIC2.65□□□□□ -1.99
ZNF540Q8NDQ6 ERHP2-201ENST00000402323 299 ntBASIC2.65□□□□□ -1.99
ZNF540Q8NDQ6 MIR320C1-201ENST00000408566 88 ntBASIC2.65□□□□□ -1.99
ZNF540Q8NDQ6 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC2.65□□□□□ -1.99
ZNF540Q8NDQ6 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC2.65□□□□□ -1.99
ZNF540Q8NDQ6 AC005005.2-201ENST00000420779 380 ntBASIC2.65□□□□□ -1.99
ZNF540Q8NDQ6 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
ZNF540Q8NDQ6 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC2.65□□□□□ -1.99
ZNF540Q8NDQ6 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC2.65□□□□□ -1.99
ZNF540Q8NDQ6 AC020550.1-201ENST00000447385 163 ntBASIC2.65□□□□□ -1.99
ZNF540Q8NDQ6 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC2.65□□□□□ -1.99
ZNF540Q8NDQ6 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC2.65□□□□□ -1.99
ZNF540Q8NDQ6 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC2.65□□□□□ -1.99
ZNF540Q8NDQ6 AC005410.1-202ENST00000460347 485 ntBASIC2.65□□□□□ -1.99
ZNF540Q8NDQ6 RPS27AP10-201ENST00000496103 208 ntBASIC2.65□□□□□ -1.99
ZNF540Q8NDQ6 AC097462.2-201ENST00000504623 481 ntBASIC2.65□□□□□ -1.99
ZNF540Q8NDQ6 AC098862.1-201ENST00000504991 413 ntBASIC2.65□□□□□ -1.99
ZNF540Q8NDQ6 SNORA9.3-201ENST00000516383 129 ntBASIC2.65□□□□□ -1.99
ZNF540Q8NDQ6 RNA5SP367-201ENST00000516557 118 ntBASIC2.65□□□□□ -1.99
ZNF540Q8NDQ6 AC090136.1-201ENST00000520009 240 ntBASIC2.65□□□□□ -1.99
ZNF540Q8NDQ6 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC2.65□□□□□ -1.99
ZNF540Q8NDQ6 AC135628.1-201ENST00000568867 534 ntBASIC2.65□□□□□ -1.99
ZNF540Q8NDQ6 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC2.65□□□□□ -1.99
ZNF540Q8NDQ6 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
ZNF540Q8NDQ6 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC2.65□□□□□ -1.99
ZNF540Q8NDQ6 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC2.65□□□□□ -1.99
ZNF540Q8NDQ6 AC022022.2-201ENST00000602989 360 ntBASIC2.65□□□□□ -1.99
ZNF540Q8NDQ6 AL049779.4-201ENST00000604500 156 ntBASIC2.65□□□□□ -1.99
ZNF540Q8NDQ6 AC004805.2-201ENST00000605382 482 ntBASIC2.65□□□□□ -1.99
ZNF540Q8NDQ6 MIR7106-201ENST00000612419 65 ntBASIC2.65□□□□□ -1.99
ZNF540Q8NDQ6 AC010297.1-201ENST00000623948 149 ntBASIC2.65□□□□□ -1.99
ZNF540Q8NDQ6 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
ZNF540Q8NDQ6 AL035425.3-201ENST00000564206 4996 ntBASIC2.65□□□□□ -1.99
ZNF540Q8NDQ6 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.65□□□□□ -1.99
ZNF540Q8NDQ6 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
ZNF540Q8NDQ6 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.64□□□□□ -1.99
ZNF540Q8NDQ6 RNU4-92P-201ENST00000363783 136 ntBASIC2.64□□□□□ -1.99
ZNF540Q8NDQ6 RNU6-853P-201ENST00000364306 107 ntBASIC2.64□□□□□ -1.99
ZNF540Q8NDQ6 RNU1-73P-201ENST00000383971 164 ntBASIC2.64□□□□□ -1.99
ZNF540Q8NDQ6 RPS4XP7-201ENST00000406274 780 ntBASIC2.64□□□□□ -1.99
ZNF540Q8NDQ6 HIGD1AP15-201ENST00000416198 280 ntBASIC2.64□□□□□ -1.99
ZNF540Q8NDQ6 AC083875.1-201ENST00000419509 405 ntBASIC2.64□□□□□ -1.99
ZNF540Q8NDQ6 AC084290.1-201ENST00000434995 374 ntBASIC2.64□□□□□ -1.99
ZNF540Q8NDQ6 EEF1A1P39-201ENST00000440791 250 ntBASIC2.64□□□□□ -1.99
ZNF540Q8NDQ6 TPT1P14-201ENST00000448018 505 ntBASIC2.64□□□□□ -1.99
ZNF540Q8NDQ6 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC2.64□□□□□ -1.99
ZNF540Q8NDQ6 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC2.64□□□□□ -1.99
ZNF540Q8NDQ6 USP9YP25-201ENST00000457708 443 ntBASIC2.64□□□□□ -1.99
ZNF540Q8NDQ6 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC2.64□□□□□ -1.99
ZNF540Q8NDQ6 MTCO2P6-201ENST00000463134 685 ntBASIC2.64□□□□□ -1.99
ZNF540Q8NDQ6 AP001486.1-201ENST00000463339 476 ntBASIC2.64□□□□□ -1.99
ZNF540Q8NDQ6 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC2.64□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 115.3 ms