Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC0.61□□□□□ -2.31
VPS13CQ709C8 FTH1P15-201ENST00000406984 280 ntBASIC0.61□□□□□ -2.31
VPS13CQ709C8 MTCO3P46-201ENST00000425787 232 ntBASIC0.61□□□□□ -2.31
VPS13CQ709C8 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC0.61□□□□□ -2.31
VPS13CQ709C8 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC0.61□□□□□ -2.31
VPS13CQ709C8 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC0.61□□□□□ -2.31
VPS13CQ709C8 RNU6-229P-201ENST00000516614 102 ntBASIC0.61□□□□□ -2.31
VPS13CQ709C8 MIR3122-201ENST00000577243 73 ntBASIC0.61□□□□□ -2.31
VPS13CQ709C8 AC022387.2-201ENST00000604050 448 ntBASIC0.61□□□□□ -2.31
VPS13CQ709C8 AP000654.2-201ENST00000605633 586 ntBASIC0.61□□□□□ -2.31
VPS13CQ709C8 MIR6840-201ENST00000611937 71 ntBASIC0.61□□□□□ -2.31
VPS13CQ709C8 AC004943.3-201ENST00000624116 600 ntBASIC0.61□□□□□ -2.31
VPS13CQ709C8 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC0.61□□□□□ -2.31
VPS13CQ709C8 AC138915.1-201ENST00000565427 1685 ntBASIC0.61□□□□□ -2.31
VPS13CQ709C8 MIR144-201ENST00000384886 86 ntBASIC0.61□□□□□ -2.31
VPS13CQ709C8 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC0.61□□□□□ -2.31
VPS13CQ709C8 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC0.61□□□□□ -2.31
VPS13CQ709C8 HSPE1P20-201ENST00000538133 289 ntBASIC0.61□□□□□ -2.31
VPS13CQ709C8 AC011468.4-201ENST00000603942 409 ntBASIC0.61□□□□□ -2.31
VPS13CQ709C8 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.61□□□□□ -2.31
VPS13CQ709C8 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC0.61□□□□□ -2.31
VPS13CQ709C8 Y_RNA.142-201ENST00000363491 102 ntBASIC0.6□□□□□ -2.31
VPS13CQ709C8 Y_RNA.170-201ENST00000363746 110 ntBASIC0.6□□□□□ -2.31
VPS13CQ709C8 UBE2V1P9-201ENST00000414760 368 ntBASIC0.6□□□□□ -2.31
VPS13CQ709C8 Z99497.1-201ENST00000421282 135 ntBASIC0.6□□□□□ -2.31
VPS13CQ709C8 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC0.6□□□□□ -2.31
VPS13CQ709C8 OR5B19P-201ENST00000531766 928 ntBASIC0.6□□□□□ -2.31
VPS13CQ709C8 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC0.6□□□□□ -2.31
VPS13CQ709C8 AC093510.2-201ENST00000562820 896 ntBASIC0.6□□□□□ -2.31
VPS13CQ709C8 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC0.6□□□□□ -2.31
VPS13CQ709C8 AC073592.7-201ENST00000623659 507 ntBASIC0.6□□□□□ -2.31
VPS13CQ709C8 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC0.6□□□□□ -2.31
VPS13CQ709C8 MIR524-201ENST00000385242 87 ntBASIC0.6□□□□□ -2.31
VPS13CQ709C8 RNU1-101P-201ENST00000391171 127 ntBASIC0.6□□□□□ -2.31
VPS13CQ709C8 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC0.6□□□□□ -2.31
VPS13CQ709C8 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC0.6□□□□□ -2.31
VPS13CQ709C8 HMGN2P10-201ENST00000448085 265 ntBASIC0.6□□□□□ -2.31
VPS13CQ709C8 CASP1P1-201ENST00000526345 212 ntBASIC0.6□□□□□ -2.31
VPS13CQ709C8 AC023050.2-201ENST00000544968 387 ntBASIC0.6□□□□□ -2.31
VPS13CQ709C8 MIR5589-201ENST00000579442 60 ntBASIC0.6□□□□□ -2.31
VPS13CQ709C8 AL050343.2-201ENST00000607338 280 ntBASIC0.6□□□□□ -2.31
VPS13CQ709C8 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC0.6□□□□□ -2.31
VPS13CQ709C8 HAUS6P2-201ENST00000433254 2404 ntBASIC0.6□□□□□ -2.31
VPS13CQ709C8 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC0.6□□□□□ -2.31
VPS13CQ709C8 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.6□□□□□ -2.31
VPS13CQ709C8 SNRPEP4-201ENST00000435815 279 ntBASIC0.6□□□□□ -2.31
VPS13CQ709C8 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC0.6□□□□□ -2.31
VPS13CQ709C8 RPS20P20-201ENST00000460498 340 ntBASIC0.6□□□□□ -2.31
VPS13CQ709C8 MRPL42P6-201ENST00000486397 371 ntBASIC0.6□□□□□ -2.31
VPS13CQ709C8 SNORA31.25-201ENST00000517242 134 ntBASIC0.6□□□□□ -2.31
VPS13CQ709C8 NOP56P3-201ENST00000549457 385 ntBASIC0.6□□□□□ -2.31
VPS13CQ709C8 OR5AQ1P-203ENST00000641818 1529 ntBASIC0.6□□□□□ -2.31
VPS13CQ709C8 SUCLA2P2-201ENST00000417269 1309 ntBASIC0.59□□□□□ -2.31
VPS13CQ709C8 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC0.59□□□□□ -2.31
VPS13CQ709C8 ZBTB8OSP1-201ENST00000342688 498 ntBASIC0.59□□□□□ -2.31
VPS13CQ709C8 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC0.59□□□□□ -2.31
VPS13CQ709C8 RNU6-173P-201ENST00000364215 104 ntBASIC0.59□□□□□ -2.31
VPS13CQ709C8 SNORA67.1-201ENST00000364749 141 ntBASIC0.59□□□□□ -2.31
VPS13CQ709C8 Y_RNA.610-201ENST00000410681 103 ntBASIC0.59□□□□□ -2.31
VPS13CQ709C8 RPS27P26-201ENST00000494583 239 ntBASIC0.59□□□□□ -2.31
VPS13CQ709C8 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC0.59□□□□□ -2.31
VPS13CQ709C8 AC140725.3-201ENST00000616193 880 ntBASIC0.59□□□□□ -2.31
VPS13CQ709C8 SSXP9-201ENST00000417503 292 ntBASIC0.59□□□□□ -2.31
VPS13CQ709C8 ZNF90P2-204ENST00000419323 1075 ntBASIC0.59□□□□□ -2.31
VPS13CQ709C8 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC0.59□□□□□ -2.31
VPS13CQ709C8 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC0.59□□□□□ -2.31
VPS13CQ709C8 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC0.59□□□□□ -2.31
VPS13CQ709C8 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.59□□□□□ -2.31
VPS13CQ709C8 RNA5SP511-201ENST00000410487 115 ntBASIC0.59□□□□□ -2.32
VPS13CQ709C8 SNORA48.11-201ENST00000517015 89 ntBASIC0.59□□□□□ -2.32
VPS13CQ709C8 AC133485.1-201ENST00000567176 124 ntBASIC0.59□□□□□ -2.32
VPS13CQ709C8 AC138907.6-201ENST00000568401 126 ntBASIC0.59□□□□□ -2.32
VPS13CQ709C8 AC021646.1-201ENST00000605469 484 ntBASIC0.59□□□□□ -2.32
VPS13CQ709C8 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC0.59□□□□□ -2.32
VPS13CQ709C8 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC0.59□□□□□ -2.32
VPS13CQ709C8 HMGB1P9-201ENST00000429856 646 ntBASIC0.58□□□□□ -2.32
VPS13CQ709C8 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC0.58□□□□□ -2.32
VPS13CQ709C8 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC0.58□□□□□ -2.32
VPS13CQ709C8 AC079148.1-201ENST00000565944 819 ntBASIC0.58□□□□□ -2.32
VPS13CQ709C8 MIR4802-201ENST00000581881 80 ntBASIC0.58□□□□□ -2.32
VPS13CQ709C8 ATP6V0E1P3-201ENST00000420036 246 ntBASIC0.58□□□□□ -2.32
VPS13CQ709C8 AL591704.2-201ENST00000421658 181 ntBASIC0.58□□□□□ -2.32
VPS13CQ709C8 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC0.58□□□□□ -2.32
VPS13CQ709C8 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC0.58□□□□□ -2.32
VPS13CQ709C8 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC0.58□□□□□ -2.32
VPS13CQ709C8 MTCO1P47-201ENST00000523889 1271 ntBASIC0.58□□□□□ -2.32
VPS13CQ709C8 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC0.58□□□□□ -2.32
VPS13CQ709C8 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC0.58□□□□□ -2.32
VPS13CQ709C8 Clostridiales-1.3-201ENST00000637703 147 ntBASIC0.58□□□□□ -2.32
VPS13CQ709C8 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC0.58□□□□□ -2.32
VPS13CQ709C8 RNA5SP347-201ENST00000362445 119 ntBASIC0.58□□□□□ -2.32
VPS13CQ709C8 RNU6-942P-201ENST00000363002 107 ntBASIC0.58□□□□□ -2.32
VPS13CQ709C8 RNU1-23P-201ENST00000363361 144 ntBASIC0.58□□□□□ -2.32
VPS13CQ709C8 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC0.58□□□□□ -2.32
VPS13CQ709C8 AC091965.2-201ENST00000512324 613 ntBASIC0.58□□□□□ -2.32
VPS13CQ709C8 AC106028.5-201ENST00000610332 395 ntBASIC0.58□□□□□ -2.32
VPS13CQ709C8 AC002550.2-201ENST00000621246 394 ntBASIC0.58□□□□□ -2.32
VPS13CQ709C8 AL031601.2-202ENST00000622650 282 ntBASIC0.58□□□□□ -2.32
VPS13CQ709C8 AC080100.1-201ENST00000624239 5356 ntBASIC0.58□□□□□ -2.32
VPS13CQ709C8 AC011155.1-201ENST00000316512 456 ntBASIC0.57□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 112 ms