Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC0.93□□□□□ -2.26
USF3Q68DE3 RNU6-405P-201ENST00000516637 110 ntBASIC0.93□□□□□ -2.26
USF3Q68DE3 RNU6-467P-201ENST00000517027 110 ntBASIC0.93□□□□□ -2.26
USF3Q68DE3 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC0.93□□□□□ -2.26
USF3Q68DE3 CA3-AS1-203ENST00000524052 430 ntTSL 2 BASIC0.93□□□□□ -2.26
USF3Q68DE3 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC0.93□□□□□ -2.26
USF3Q68DE3 MIR4658-201ENST00000584344 65 ntBASIC0.93□□□□□ -2.26
USF3Q68DE3 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC0.93□□□□□ -2.26
USF3Q68DE3 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC0.93□□□□□ -2.26
USF3Q68DE3 DDX10P1-201ENST00000448545 1933 ntBASIC0.93□□□□□ -2.26
USF3Q68DE3 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC0.93□□□□□ -2.26
USF3Q68DE3 SNRPEP10-201ENST00000420249 274 ntBASIC0.93□□□□□ -2.26
USF3Q68DE3 AC099677.1-201ENST00000420575 175 ntBASIC0.93□□□□□ -2.26
USF3Q68DE3 TMEM167AP1-201ENST00000423409 219 ntBASIC0.93□□□□□ -2.26
USF3Q68DE3 AC079780.1-201ENST00000428259 207 ntBASIC0.93□□□□□ -2.26
USF3Q68DE3 RPL30P4-201ENST00000429309 333 ntBASIC0.93□□□□□ -2.26
USF3Q68DE3 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC0.93□□□□□ -2.26
USF3Q68DE3 AC020699.1-201ENST00000505161 445 ntBASIC0.93□□□□□ -2.26
USF3Q68DE3 AP004247.1-201ENST00000531556 1289 ntBASIC0.93□□□□□ -2.26
USF3Q68DE3 AL121821.2-201ENST00000556081 394 ntBASIC0.93□□□□□ -2.26
USF3Q68DE3 AC115085.1-201ENST00000588924 229 ntBASIC0.93□□□□□ -2.26
USF3Q68DE3 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC0.93□□□□□ -2.26
USF3Q68DE3 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC0.92□□□□□ -2.26
USF3Q68DE3 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC0.92□□□□□ -2.26
USF3Q68DE3 RNU4-42P-201ENST00000364738 142 ntBASIC0.92□□□□□ -2.26
USF3Q68DE3 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC0.92□□□□□ -2.26
USF3Q68DE3 AC068050.1-201ENST00000394891 380 ntBASIC0.92□□□□□ -2.26
USF3Q68DE3 TXNP7-201ENST00000406296 293 ntBASIC0.92□□□□□ -2.26
USF3Q68DE3 AC008850.1-201ENST00000427546 362 ntBASIC0.92□□□□□ -2.26
USF3Q68DE3 AL445305.1-201ENST00000432577 575 ntBASIC0.92□□□□□ -2.26
USF3Q68DE3 AC093155.1-201ENST00000440164 826 ntBASIC0.92□□□□□ -2.26
USF3Q68DE3 AC108059.3-201ENST00000456388 214 ntBASIC0.92□□□□□ -2.26
USF3Q68DE3 RNA5SP233-201ENST00000459153 113 ntBASIC0.92□□□□□ -2.26
USF3Q68DE3 AC005410.1-202ENST00000460347 485 ntBASIC0.92□□□□□ -2.26
USF3Q68DE3 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC0.92□□□□□ -2.26
USF3Q68DE3 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC0.92□□□□□ -2.26
USF3Q68DE3 AC090616.3-201ENST00000582184 217 ntBASIC0.92□□□□□ -2.26
USF3Q68DE3 MIR3616-201ENST00000584070 92 ntBASIC0.92□□□□□ -2.26
USF3Q68DE3 AL355810.1-201ENST00000614629 552 ntBASIC0.92□□□□□ -2.26
USF3Q68DE3 AP003072.5-201ENST00000623872 773 ntBASIC0.92□□□□□ -2.26
USF3Q68DE3 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC0.92□□□□□ -2.26
USF3Q68DE3 Y_RNA.30-201ENST00000362572 97 ntBASIC0.92□□□□□ -2.26
USF3Q68DE3 RNA5SP391-201ENST00000363456 119 ntBASIC0.92□□□□□ -2.26
USF3Q68DE3 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC0.92□□□□□ -2.26
USF3Q68DE3 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC0.92□□□□□ -2.26
USF3Q68DE3 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.92□□□□□ -2.26
USF3Q68DE3 AL034418.1-201ENST00000448675 860 ntBASIC0.92□□□□□ -2.26
USF3Q68DE3 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC0.92□□□□□ -2.26
USF3Q68DE3 AC087588.1-201ENST00000462203 316 ntBASIC0.92□□□□□ -2.26
USF3Q68DE3 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC0.92□□□□□ -2.26
USF3Q68DE3 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC0.92□□□□□ -2.26
USF3Q68DE3 AC022662.1-201ENST00000580252 331 ntBASIC0.92□□□□□ -2.26
USF3Q68DE3 AC123912.5-201ENST00000605470 343 ntBASIC0.92□□□□□ -2.26
USF3Q68DE3 AC009090.3-201ENST00000616553 565 ntBASIC0.92□□□□□ -2.26
USF3Q68DE3 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
USF3Q68DE3 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC0.92□□□□□ -2.26
USF3Q68DE3 AC009902.3-201ENST00000606235 2172 ntBASIC0.91□□□□□ -2.26
USF3Q68DE3 RNU6-1251P-201ENST00000364502 107 ntBASIC0.91□□□□□ -2.26
USF3Q68DE3 AL356379.1-201ENST00000414105 126 ntBASIC0.91□□□□□ -2.26
USF3Q68DE3 SDAD1P3-201ENST00000427380 333 ntBASIC0.91□□□□□ -2.26
USF3Q68DE3 AL356867.1-201ENST00000429623 299 ntBASIC0.91□□□□□ -2.26
USF3Q68DE3 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC0.91□□□□□ -2.26
USF3Q68DE3 TPRKBP1-201ENST00000456243 481 ntBASIC0.91□□□□□ -2.26
USF3Q68DE3 AC114801.2-201ENST00000503825 781 ntBASIC0.91□□□□□ -2.26
USF3Q68DE3 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC0.91□□□□□ -2.26
USF3Q68DE3 AL136363.1-201ENST00000605349 337 ntBASIC0.91□□□□□ -2.26
USF3Q68DE3 AC018630.2-201ENST00000534866 2403 ntBASIC0.91□□□□□ -2.26
USF3Q68DE3 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.91□□□□□ -2.26
USF3Q68DE3 HMGB3P31-201ENST00000413333 595 ntBASIC0.91□□□□□ -2.26
USF3Q68DE3 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC0.91□□□□□ -2.26
USF3Q68DE3 AL031663.1-201ENST00000437445 219 ntBASIC0.91□□□□□ -2.26
USF3Q68DE3 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC0.91□□□□□ -2.26
USF3Q68DE3 AL645638.1-201ENST00000440519 361 ntBASIC0.91□□□□□ -2.26
USF3Q68DE3 MTCYBP12-201ENST00000440559 1134 ntBASIC0.91□□□□□ -2.26
USF3Q68DE3 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC0.91□□□□□ -2.26
USF3Q68DE3 SNORA31.8-201ENST00000516327 108 ntBASIC0.91□□□□□ -2.26
USF3Q68DE3 AC023825.1-201ENST00000566704 1030 ntBASIC0.91□□□□□ -2.26
USF3Q68DE3 AC073111.2-201ENST00000605657 1075 ntBASIC0.91□□□□□ -2.26
USF3Q68DE3 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC0.91□□□□□ -2.26
USF3Q68DE3 AP001486.3-201ENST00000615334 372 ntBASIC0.91□□□□□ -2.26
USF3Q68DE3 AC091932.3-201ENST00000624223 323 ntBASIC0.91□□□□□ -2.26
USF3Q68DE3 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC0.9□□□□□ -2.27
USF3Q68DE3 RNU1-105P-201ENST00000363470 161 ntBASIC0.9□□□□□ -2.27
USF3Q68DE3 SNORD14B-201ENST00000364533 90 ntBASIC0.9□□□□□ -2.27
USF3Q68DE3 MIR493-201ENST00000385254 89 ntBASIC0.9□□□□□ -2.27
USF3Q68DE3 RNU6-1197P-201ENST00000391183 107 ntBASIC0.9□□□□□ -2.27
USF3Q68DE3 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC0.9□□□□□ -2.27
USF3Q68DE3 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC0.9□□□□□ -2.27
USF3Q68DE3 AL353689.1-201ENST00000438895 199 ntBASIC0.9□□□□□ -2.27
USF3Q68DE3 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC0.9□□□□□ -2.27
USF3Q68DE3 AC108120.2-201ENST00000512973 294 ntBASIC0.9□□□□□ -2.27
USF3Q68DE3 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC0.9□□□□□ -2.27
USF3Q68DE3 ERHP1-201ENST00000523006 310 ntBASIC0.9□□□□□ -2.27
USF3Q68DE3 AC233266.2-201ENST00000567067 528 ntBASIC0.9□□□□□ -2.27
USF3Q68DE3 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC0.9□□□□□ -2.27
USF3Q68DE3 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC0.9□□□□□ -2.27
USF3Q68DE3 AL449363.1-201ENST00000617815 186 ntBASIC0.9□□□□□ -2.27
USF3Q68DE3 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC0.9□□□□□ -2.27
USF3Q68DE3 AL162373.1-201ENST00000620433 407 ntBASIC0.9□□□□□ -2.27
USF3Q68DE3 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC0.9□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 104.6 ms