Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.53□□□□□ -1.68
COL6A1P12109 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC4.53□□□□□ -1.68
COL6A1P12109 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC4.52□□□□□ -1.69
COL6A1P12109 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
COL6A1P12109 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
COL6A1P12109 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL6A1P12109 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.52□□□□□ -1.69
COL6A1P12109 SNORA60-201ENST00000362396 134 ntBASIC4.52□□□□□ -1.69
COL6A1P12109 RNU6-522P-201ENST00000364497 107 ntBASIC4.52□□□□□ -1.69
COL6A1P12109 Y_RNA.301-201ENST00000364990 103 ntBASIC4.52□□□□□ -1.69
COL6A1P12109 MIR218-2-201ENST00000385006 110 ntBASIC4.52□□□□□ -1.69
COL6A1P12109 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
COL6A1P12109 RNY4P36-201ENST00000391116 96 ntBASIC4.52□□□□□ -1.69
COL6A1P12109 Z82205.1-201ENST00000428456 297 ntBASIC4.52□□□□□ -1.69
COL6A1P12109 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC4.52□□□□□ -1.69
COL6A1P12109 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC4.52□□□□□ -1.69
COL6A1P12109 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
COL6A1P12109 COX7A2P2-201ENST00000505291 250 ntBASIC4.52□□□□□ -1.69
COL6A1P12109 AC092436.1-201ENST00000506450 503 ntBASIC4.52□□□□□ -1.69
COL6A1P12109 HMGB3P15-201ENST00000507326 574 ntBASIC4.52□□□□□ -1.69
COL6A1P12109 RPL39P5-202ENST00000512505 151 ntBASIC4.52□□□□□ -1.69
COL6A1P12109 RNU6-864P-201ENST00000516256 108 ntBASIC4.52□□□□□ -1.69
COL6A1P12109 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.52□□□□□ -1.69
COL6A1P12109 MTND4P7-201ENST00000523876 130 ntBASIC4.52□□□□□ -1.69
COL6A1P12109 AP000857.1-201ENST00000532151 543 ntBASIC4.52□□□□□ -1.69
COL6A1P12109 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC4.52□□□□□ -1.69
COL6A1P12109 MIR4703-201ENST00000577728 79 ntBASIC4.52□□□□□ -1.69
COL6A1P12109 AC087499.8-201ENST00000578406 226 ntBASIC4.52□□□□□ -1.69
COL6A1P12109 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC4.52□□□□□ -1.69
COL6A1P12109 MIR5684-201ENST00000585074 65 ntBASIC4.52□□□□□ -1.69
COL6A1P12109 AC008737.2-201ENST00000599446 118 ntBASIC4.52□□□□□ -1.69
COL6A1P12109 AC136443.5-201ENST00000603741 370 ntBASIC4.52□□□□□ -1.69
COL6A1P12109 CYP2C61P-201ENST00000604072 290 ntBASIC4.52□□□□□ -1.69
COL6A1P12109 AC016925.2-201ENST00000605108 242 ntBASIC4.52□□□□□ -1.69
COL6A1P12109 MIR7975-201ENST00000619350 68 ntBASIC4.52□□□□□ -1.69
COL6A1P12109 AL078596.1-201ENST00000624856 447 ntBASIC4.52□□□□□ -1.69
COL6A1P12109 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.52□□□□□ -1.69
COL6A1P12109 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL6A1P12109 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL6A1P12109 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL6A1P12109 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL6A1P12109 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
COL6A1P12109 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL6A1P12109 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC4.52□□□□□ -1.69
COL6A1P12109 MTND5P16-201ENST00000460269 1703 ntBASIC4.52□□□□□ -1.69
COL6A1P12109 MTND5P1-201ENST00000445440 1375 ntBASIC4.52□□□□□ -1.69
COL6A1P12109 MTCO1P12-201ENST00000414273 1543 ntBASIC4.51□□□□□ -1.69
COL6A1P12109 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
COL6A1P12109 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
COL6A1P12109 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.51□□□□□ -1.69
COL6A1P12109 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
COL6A1P12109 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.51□□□□□ -1.69
COL6A1P12109 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
COL6A1P12109 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
COL6A1P12109 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
COL6A1P12109 RNU6-179P-201ENST00000363350 107 ntBASIC4.51□□□□□ -1.69
COL6A1P12109 U3.12-201ENST00000364498 214 ntBASIC4.51□□□□□ -1.69
COL6A1P12109 CRP-202ENST00000368110 667 ntTSL 3 BASIC4.51□□□□□ -1.69
COL6A1P12109 RNU6-639P-201ENST00000384074 107 ntBASIC4.51□□□□□ -1.69
COL6A1P12109 Y_RNA.459-201ENST00000384251 102 ntBASIC4.51□□□□□ -1.69
COL6A1P12109 SNORD116-29-201ENST00000384516 83 ntBASIC4.51□□□□□ -1.69
COL6A1P12109 SNORD96B-201ENST00000386148 79 ntBASIC4.51□□□□□ -1.69
COL6A1P12109 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
COL6A1P12109 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.51□□□□□ -1.69
COL6A1P12109 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC4.51□□□□□ -1.69
COL6A1P12109 RPS11P1-201ENST00000451072 473 ntBASIC4.51□□□□□ -1.69
COL6A1P12109 RPS24P6-201ENST00000452670 400 ntBASIC4.51□□□□□ -1.69
COL6A1P12109 RPL23AP62-201ENST00000463396 453 ntBASIC4.51□□□□□ -1.69
COL6A1P12109 SNRPGP3-201ENST00000469405 227 ntBASIC4.51□□□□□ -1.69
COL6A1P12109 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC4.51□□□□□ -1.69
COL6A1P12109 AC005741.1-201ENST00000511094 432 ntBASIC4.51□□□□□ -1.69
COL6A1P12109 MDM2-233ENST00000545204 398 ntTSL 5 BASIC4.51□□□□□ -1.69
COL6A1P12109 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC4.51□□□□□ -1.69
COL6A1P12109 AC126177.3-201ENST00000551839 688 ntBASIC4.51□□□□□ -1.69
COL6A1P12109 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC4.51□□□□□ -1.69
COL6A1P12109 MIR4424-201ENST00000585257 86 ntBASIC4.51□□□□□ -1.69
COL6A1P12109 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC4.51□□□□□ -1.69
COL6A1P12109 XIAPP1-201ENST00000603162 600 ntBASIC4.51□□□□□ -1.69
COL6A1P12109 AC106900.2-201ENST00000604994 317 ntBASIC4.51□□□□□ -1.69
COL6A1P12109 SNORD91B-202ENST00000608459 222 ntBASIC4.51□□□□□ -1.69
COL6A1P12109 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
COL6A1P12109 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC4.51□□□□□ -1.69
COL6A1P12109 uc_338.34-201ENST00000617467 174 ntBASIC4.51□□□□□ -1.69
COL6A1P12109 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC4.51□□□□□ -1.69
COL6A1P12109 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC4.51□□□□□ -1.69
COL6A1P12109 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.51□□□□□ -1.69
COL6A1P12109 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC4.51□□□□□ -1.69
COL6A1P12109 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
COL6A1P12109 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.51□□□□□ -1.69
COL6A1P12109 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC4.51□□□□□ -1.69
COL6A1P12109 AC116096.1-201ENST00000566804 2314 ntBASIC4.51□□□□□ -1.69
COL6A1P12109 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
COL6A1P12109 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC4.51□□□□□ -1.69
COL6A1P12109 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
COL6A1P12109 AC092435.4-201ENST00000623012 4159 ntBASIC4.5□□□□□ -1.69
COL6A1P12109 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.5□□□□□ -1.69
COL6A1P12109 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.5□□□□□ -1.69
COL6A1P12109 RNU6-511P-201ENST00000363496 107 ntBASIC4.5□□□□□ -1.69
COL6A1P12109 MTCYBP4-201ENST00000401524 249 ntBASIC4.5□□□□□ -1.69
COL6A1P12109 RNU6-712P-201ENST00000410558 100 ntBASIC4.5□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 153.6 ms