Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 RNU2-33P-201ENST00000410344 192 ntBASIC2.74□□□□□ -1.97
LHX3Q9UBR4 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
LHX3Q9UBR4 AC099548.1-201ENST00000421443 426 ntBASIC2.74□□□□□ -1.97
LHX3Q9UBR4 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC2.74□□□□□ -1.97
LHX3Q9UBR4 RPS27AP14-201ENST00000422868 454 ntBASIC2.74□□□□□ -1.97
LHX3Q9UBR4 AC109583.1-201ENST00000432156 268 ntBASIC2.74□□□□□ -1.97
LHX3Q9UBR4 ARPC3P1-201ENST00000437218 533 ntBASIC2.74□□□□□ -1.97
LHX3Q9UBR4 AL049734.2-201ENST00000441066 616 ntBASIC2.74□□□□□ -1.97
LHX3Q9UBR4 GAPDHP27-201ENST00000447427 1020 ntBASIC2.74□□□□□ -1.97
LHX3Q9UBR4 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC2.74□□□□□ -1.97
LHX3Q9UBR4 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC2.74□□□□□ -1.97
LHX3Q9UBR4 MTCO1P42-201ENST00000457379 726 ntBASIC2.74□□□□□ -1.97
LHX3Q9UBR4 SNORD109B-201ENST00000458961 67 ntBASIC2.74□□□□□ -1.97
LHX3Q9UBR4 SNORD109A-201ENST00000459128 67 ntBASIC2.74□□□□□ -1.97
LHX3Q9UBR4 MTND4LP3-201ENST00000468320 276 ntBASIC2.74□□□□□ -1.97
LHX3Q9UBR4 RPL7P5-201ENST00000471472 736 ntBASIC2.74□□□□□ -1.97
LHX3Q9UBR4 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC2.74□□□□□ -1.97
LHX3Q9UBR4 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.74□□□□□ -1.97
LHX3Q9UBR4 MEPE-206ENST00000511670 550 ntTSL 4 BASIC2.74□□□□□ -1.97
LHX3Q9UBR4 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC2.74□□□□□ -1.97
LHX3Q9UBR4 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC2.74□□□□□ -1.97
LHX3Q9UBR4 RNU6-1129P-201ENST00000515964 104 ntBASIC2.74□□□□□ -1.97
LHX3Q9UBR4 SNORA31.21-201ENST00000517180 77 ntBASIC2.74□□□□□ -1.97
LHX3Q9UBR4 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.74□□□□□ -1.97
LHX3Q9UBR4 AC093012.1-202ENST00000549403 582 ntBASIC2.74□□□□□ -1.97
LHX3Q9UBR4 AC068135.2-201ENST00000569293 1028 ntBASIC2.74□□□□□ -1.97
LHX3Q9UBR4 AC006504.3-201ENST00000586818 523 ntBASIC2.74□□□□□ -1.97
LHX3Q9UBR4 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC2.74□□□□□ -1.97
LHX3Q9UBR4 SNHG22-203ENST00000617833 660 ntBASIC2.74□□□□□ -1.97
LHX3Q9UBR4 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC2.74□□□□□ -1.97
LHX3Q9UBR4 PSMD5-AS1-215ENST00000640622 205 ntBASIC2.74□□□□□ -1.97
LHX3Q9UBR4 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
LHX3Q9UBR4 PAPPA-AS1-201ENST00000445861 2450 ntBASIC2.74□□□□□ -1.97
LHX3Q9UBR4 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.73□□□□□ -1.97
LHX3Q9UBR4 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.73□□□□□ -1.97
LHX3Q9UBR4 Y_RNA.97-201ENST00000363094 102 ntBASIC2.73□□□□□ -1.97
LHX3Q9UBR4 RNU5A-8P-201ENST00000364102 114 ntBASIC2.73□□□□□ -1.97
LHX3Q9UBR4 SNORA51.4-201ENST00000364993 124 ntBASIC2.73□□□□□ -1.97
LHX3Q9UBR4 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC2.73□□□□□ -1.97
LHX3Q9UBR4 AL590004.2-201ENST00000404787 371 ntBASIC2.73□□□□□ -1.97
LHX3Q9UBR4 RNU2-52P-201ENST00000410680 190 ntBASIC2.73□□□□□ -1.97
LHX3Q9UBR4 AC078974.1-201ENST00000411597 223 ntBASIC2.73□□□□□ -1.97
LHX3Q9UBR4 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC2.73□□□□□ -1.97
LHX3Q9UBR4 AL139281.1-201ENST00000422120 335 ntBASIC2.73□□□□□ -1.97
LHX3Q9UBR4 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC2.73□□□□□ -1.97
LHX3Q9UBR4 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC2.73□□□□□ -1.97
LHX3Q9UBR4 AC005094.1-201ENST00000440420 368 ntBASIC2.73□□□□□ -1.97
LHX3Q9UBR4 DDX3P2-201ENST00000446138 111 ntBASIC2.73□□□□□ -1.97
LHX3Q9UBR4 AC108938.1-201ENST00000451204 136 ntBASIC2.73□□□□□ -1.97
LHX3Q9UBR4 AC108059.3-201ENST00000456388 214 ntBASIC2.73□□□□□ -1.97
LHX3Q9UBR4 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC2.73□□□□□ -1.97
LHX3Q9UBR4 AC004924.1-201ENST00000480160 781 ntBASIC2.73□□□□□ -1.97
LHX3Q9UBR4 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC2.73□□□□□ -1.97
LHX3Q9UBR4 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
LHX3Q9UBR4 AC116347.2-201ENST00000514912 523 ntBASIC2.73□□□□□ -1.97
LHX3Q9UBR4 RNU6-1003P-201ENST00000517099 105 ntBASIC2.73□□□□□ -1.97
LHX3Q9UBR4 RNU6-64P-201ENST00000517119 105 ntBASIC2.73□□□□□ -1.97
LHX3Q9UBR4 AC100870.1-201ENST00000522035 505 ntBASIC2.73□□□□□ -1.97
LHX3Q9UBR4 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC2.73□□□□□ -1.97
LHX3Q9UBR4 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
LHX3Q9UBR4 DEFB108A-201ENST00000530110 222 ntBASIC2.73□□□□□ -1.97
LHX3Q9UBR4 MAL2-203ENST00000534619 578 ntTSL 4 BASIC2.73□□□□□ -1.97
LHX3Q9UBR4 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC2.73□□□□□ -1.97
LHX3Q9UBR4 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC2.73□□□□□ -1.97
LHX3Q9UBR4 PCMTD1P2-201ENST00000565017 355 ntBASIC2.73□□□□□ -1.97
LHX3Q9UBR4 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC2.73□□□□□ -1.97
LHX3Q9UBR4 AP000403.1-201ENST00000603349 851 ntBASIC2.73□□□□□ -1.97
LHX3Q9UBR4 AC008277.2-201ENST00000605196 797 ntBASIC2.73□□□□□ -1.97
LHX3Q9UBR4 Z99289.3-201ENST00000605586 594 ntBASIC2.73□□□□□ -1.97
LHX3Q9UBR4 AC090970.3-201ENST00000612566 866 ntBASIC2.73□□□□□ -1.97
LHX3Q9UBR4 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.73□□□□□ -1.97
LHX3Q9UBR4 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC2.73□□□□□ -1.97
LHX3Q9UBR4 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
LHX3Q9UBR4 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.73□□□□□ -1.97
LHX3Q9UBR4 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.73□□□□□ -1.97
LHX3Q9UBR4 ASNSP3-201ENST00000451989 1306 ntBASIC2.72□□□□□ -1.97
LHX3Q9UBR4 RNU6-500P-201ENST00000362349 107 ntBASIC2.72□□□□□ -1.97
LHX3Q9UBR4 Y_RNA.46-201ENST00000362695 102 ntBASIC2.72□□□□□ -1.97
LHX3Q9UBR4 DYNLT3P1-201ENST00000378574 347 ntBASIC2.72□□□□□ -1.97
LHX3Q9UBR4 RNU6-217P-201ENST00000384164 104 ntBASIC2.72□□□□□ -1.97
LHX3Q9UBR4 RNU6-140P-201ENST00000384566 108 ntBASIC2.72□□□□□ -1.97
LHX3Q9UBR4 AL512633.1-201ENST00000399931 655 ntBASIC2.72□□□□□ -1.97
LHX3Q9UBR4 RPL17P12-201ENST00000413391 526 ntBASIC2.72□□□□□ -1.97
LHX3Q9UBR4 AC009487.2-201ENST00000420969 6821 ntBASIC2.72□□□□□ -1.97
LHX3Q9UBR4 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC2.72□□□□□ -1.97
LHX3Q9UBR4 ZNF863P-201ENST00000426746 417 ntBASIC2.72□□□□□ -1.97
LHX3Q9UBR4 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC2.72□□□□□ -1.97
LHX3Q9UBR4 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC2.72□□□□□ -1.97
LHX3Q9UBR4 AL714022.1-201ENST00000439897 151 ntBASIC2.72□□□□□ -1.97
LHX3Q9UBR4 AC020550.1-201ENST00000447385 163 ntBASIC2.72□□□□□ -1.97
LHX3Q9UBR4 AC093392.2-201ENST00000450682 337 ntBASIC2.72□□□□□ -1.97
LHX3Q9UBR4 RNU7-125P-201ENST00000458760 62 ntBASIC2.72□□□□□ -1.97
LHX3Q9UBR4 RPS29P12-201ENST00000460178 152 ntBASIC2.72□□□□□ -1.97
LHX3Q9UBR4 AC091179.1-201ENST00000461606 579 ntBASIC2.72□□□□□ -1.97
LHX3Q9UBR4 AC116337.2-201ENST00000477662 156 ntBASIC2.72□□□□□ -1.97
LHX3Q9UBR4 AL160314.1-201ENST00000490836 438 ntBASIC2.72□□□□□ -1.97
LHX3Q9UBR4 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
LHX3Q9UBR4 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC2.72□□□□□ -1.97
LHX3Q9UBR4 MTND5P13-201ENST00000513046 1079 ntBASIC2.72□□□□□ -1.97
LHX3Q9UBR4 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC2.72□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 95 ms