Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AL050341.1-201ENST00000447743 313 ntBASIC1.47□□□□□ -2.17
SCN3AQ9NY46 AL136380.1-201ENST00000447970 162 ntBASIC1.47□□□□□ -2.17
SCN3AQ9NY46 MTND5P8-201ENST00000449817 1083 ntBASIC1.47□□□□□ -2.17
SCN3AQ9NY46 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC1.47□□□□□ -2.17
SCN3AQ9NY46 AC097493.1-201ENST00000463958 372 ntBASIC1.47□□□□□ -2.17
SCN3AQ9NY46 AC107626.1-201ENST00000471084 183 ntBASIC1.47□□□□□ -2.17
SCN3AQ9NY46 NAA50-206ENST00000493454 964 ntTSL 2 BASIC1.47□□□□□ -2.17
SCN3AQ9NY46 AC114322.1-201ENST00000506771 926 ntBASIC1.47□□□□□ -2.17
SCN3AQ9NY46 AC117522.2-201ENST00000510049 657 ntBASIC1.47□□□□□ -2.17
SCN3AQ9NY46 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.47□□□□□ -2.17
SCN3AQ9NY46 AC010546.1-201ENST00000569391 485 ntBASIC1.47□□□□□ -2.17
SCN3AQ9NY46 MIR4498-201ENST00000577599 66 ntBASIC1.47□□□□□ -2.17
SCN3AQ9NY46 MIR5194-201ENST00000582634 120 ntBASIC1.47□□□□□ -2.17
SCN3AQ9NY46 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC1.47□□□□□ -2.17
SCN3AQ9NY46 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC1.47□□□□□ -2.17
SCN3AQ9NY46 FRG1HP-204ENST00000617940 757 ntBASIC1.47□□□□□ -2.17
SCN3AQ9NY46 U6.101-201ENST00000637707 76 ntBASIC1.47□□□□□ -2.17
SCN3AQ9NY46 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
SCN3AQ9NY46 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC1.46□□□□□ -2.18
SCN3AQ9NY46 RNU6-920P-201ENST00000410926 92 ntBASIC1.46□□□□□ -2.18
SCN3AQ9NY46 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC1.46□□□□□ -2.18
SCN3AQ9NY46 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC1.46□□□□□ -2.18
SCN3AQ9NY46 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC1.46□□□□□ -2.18
SCN3AQ9NY46 snoU13.18-201ENST00000459483 104 ntBASIC1.46□□□□□ -2.18
SCN3AQ9NY46 AC114786.4-201ENST00000508771 728 ntBASIC1.46□□□□□ -2.18
SCN3AQ9NY46 AC114797.1-201ENST00000514003 728 ntBASIC1.46□□□□□ -2.18
SCN3AQ9NY46 AC022483.1-201ENST00000514020 567 ntBASIC1.46□□□□□ -2.18
SCN3AQ9NY46 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC1.46□□□□□ -2.18
SCN3AQ9NY46 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC1.46□□□□□ -2.18
SCN3AQ9NY46 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC1.46□□□□□ -2.18
SCN3AQ9NY46 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC1.46□□□□□ -2.18
SCN3AQ9NY46 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC1.46□□□□□ -2.18
SCN3AQ9NY46 AC022662.1-201ENST00000580252 331 ntBASIC1.46□□□□□ -2.18
SCN3AQ9NY46 MIR3683-201ENST00000580847 82 ntBASIC1.46□□□□□ -2.18
SCN3AQ9NY46 AC012443.1-201ENST00000605605 231 ntBASIC1.46□□□□□ -2.18
SCN3AQ9NY46 AC016911.1-201ENST00000613297 452 ntBASIC1.46□□□□□ -2.18
SCN3AQ9NY46 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.46□□□□□ -2.18
SCN3AQ9NY46 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
SCN3AQ9NY46 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
SCN3AQ9NY46 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.45□□□□□ -2.18
SCN3AQ9NY46 DEFB108F-201ENST00000344638 222 ntBASIC1.45□□□□□ -2.18
SCN3AQ9NY46 SNORA38-201ENST00000363946 132 ntBASIC1.45□□□□□ -2.18
SCN3AQ9NY46 MT-TC-201ENST00000387405 66 ntBASIC1.45□□□□□ -2.18
SCN3AQ9NY46 AL445183.3-201ENST00000414168 502 ntBASIC1.45□□□□□ -2.18
SCN3AQ9NY46 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC1.45□□□□□ -2.18
SCN3AQ9NY46 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC1.45□□□□□ -2.18
SCN3AQ9NY46 TAAR7P-201ENST00000436141 242 ntBASIC1.45□□□□□ -2.18
SCN3AQ9NY46 AC004865.1-201ENST00000442276 1003 ntBASIC1.45□□□□□ -2.18
SCN3AQ9NY46 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC1.45□□□□□ -2.18
SCN3AQ9NY46 AL353691.1-201ENST00000451332 387 ntBASIC1.45□□□□□ -2.18
SCN3AQ9NY46 MTND2P6-201ENST00000455337 1030 ntBASIC1.45□□□□□ -2.18
SCN3AQ9NY46 snoU109.4-201ENST00000458953 143 ntBASIC1.45□□□□□ -2.18
SCN3AQ9NY46 RN7SL274P-201ENST00000492268 272 ntBASIC1.45□□□□□ -2.18
SCN3AQ9NY46 BOLA3P3-201ENST00000505182 232 ntBASIC1.45□□□□□ -2.18
SCN3AQ9NY46 SNORD19.2-201ENST00000516978 73 ntBASIC1.45□□□□□ -2.18
SCN3AQ9NY46 DEFB108D-201ENST00000527787 222 ntBASIC1.45□□□□□ -2.18
SCN3AQ9NY46 CYCSP26-201ENST00000534107 320 ntBASIC1.45□□□□□ -2.18
SCN3AQ9NY46 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC1.45□□□□□ -2.18
SCN3AQ9NY46 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC1.45□□□□□ -2.18
SCN3AQ9NY46 AL391261.3-201ENST00000557194 520 ntBASIC1.45□□□□□ -2.18
SCN3AQ9NY46 SNORD53B-201ENST00000577887 78 ntBASIC1.45□□□□□ -2.18
SCN3AQ9NY46 AL020997.3-201ENST00000602843 359 ntBASIC1.45□□□□□ -2.18
SCN3AQ9NY46 SDR42E1P2-201ENST00000614861 481 ntBASIC1.45□□□□□ -2.18
SCN3AQ9NY46 SDR42E1P4-201ENST00000620894 481 ntBASIC1.45□□□□□ -2.18
SCN3AQ9NY46 MIR7515-201ENST00000637837 67 ntBASIC1.45□□□□□ -2.18
SCN3AQ9NY46 DDX10P1-201ENST00000448545 1933 ntBASIC1.45□□□□□ -2.18
SCN3AQ9NY46 AC080128.1-201ENST00000474389 1917 ntBASIC1.45□□□□□ -2.18
SCN3AQ9NY46 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.45□□□□□ -2.18
SCN3AQ9NY46 RNU6-461P-201ENST00000364195 107 ntBASIC1.45□□□□□ -2.18
SCN3AQ9NY46 BX510359.4-201ENST00000423750 193 ntBASIC1.45□□□□□ -2.18
SCN3AQ9NY46 USP12PX-201ENST00000432383 1057 ntBASIC1.45□□□□□ -2.18
SCN3AQ9NY46 HMGB1P31-201ENST00000437242 427 ntBASIC1.45□□□□□ -2.18
SCN3AQ9NY46 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC1.45□□□□□ -2.18
SCN3AQ9NY46 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC1.45□□□□□ -2.18
SCN3AQ9NY46 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC1.45□□□□□ -2.18
SCN3AQ9NY46 RNA5SP471-201ENST00000516971 106 ntBASIC1.45□□□□□ -2.18
SCN3AQ9NY46 IGJP1-201ENST00000522682 475 ntBASIC1.45□□□□□ -2.18
SCN3AQ9NY46 AC118942.1-201ENST00000529674 1035 ntBASIC1.45□□□□□ -2.18
SCN3AQ9NY46 ZKSCAN7P1-201ENST00000543668 673 ntBASIC1.45□□□□□ -2.18
SCN3AQ9NY46 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC1.45□□□□□ -2.18
SCN3AQ9NY46 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC1.45□□□□□ -2.18
SCN3AQ9NY46 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.45□□□□□ -2.18
SCN3AQ9NY46 AC012669.1-201ENST00000603209 283 ntBASIC1.45□□□□□ -2.18
SCN3AQ9NY46 AL645939.4-201ENST00000604495 135 ntBASIC1.45□□□□□ -2.18
SCN3AQ9NY46 AC079791.1-201ENST00000605356 973 ntBASIC1.45□□□□□ -2.18
SCN3AQ9NY46 AP001486.3-201ENST00000615334 372 ntBASIC1.45□□□□□ -2.18
SCN3AQ9NY46 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC1.45□□□□□ -2.18
SCN3AQ9NY46 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC1.45□□□□□ -2.18
SCN3AQ9NY46 AL159972.1-201ENST00000625150 448 ntBASIC1.45□□□□□ -2.18
SCN3AQ9NY46 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
SCN3AQ9NY46 DBF4P1-201ENST00000412976 1892 ntBASIC1.45□□□□□ -2.18
SCN3AQ9NY46 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
SCN3AQ9NY46 AC006026.1-201ENST00000444025 1803 ntBASIC1.44□□□□□ -2.18
SCN3AQ9NY46 Y_RNA.118-201ENST00000363300 101 ntBASIC1.44□□□□□ -2.18
SCN3AQ9NY46 SNORA3A-201ENST00000364113 130 ntBASIC1.44□□□□□ -2.18
SCN3AQ9NY46 RNA5SP363-201ENST00000365072 115 ntBASIC1.44□□□□□ -2.18
SCN3AQ9NY46 RNU6-441P-201ENST00000384545 106 ntBASIC1.44□□□□□ -2.18
SCN3AQ9NY46 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
SCN3AQ9NY46 AC007560.1-201ENST00000426912 237 ntBASIC1.44□□□□□ -2.18
SCN3AQ9NY46 AL353689.1-201ENST00000438895 199 ntBASIC1.44□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 114 ms