Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC136475.10-201ENST00000620253 385 ntBASIC2.89□□□□□ -1.95
NKX3-1Q99801 AC110774.1-201ENST00000623567 2018 ntBASIC2.89□□□□□ -1.95
NKX3-1Q99801 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC2.89□□□□□ -1.95
NKX3-1Q99801 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
NKX3-1Q99801 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
NKX3-1Q99801 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.88□□□□□ -1.95
NKX3-1Q99801 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
NKX3-1Q99801 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
NKX3-1Q99801 Y_RNA.3-201ENST00000362331 103 ntBASIC2.88□□□□□ -1.95
NKX3-1Q99801 Y_RNA.22-201ENST00000362492 102 ntBASIC2.88□□□□□ -1.95
NKX3-1Q99801 RNA5SP119-201ENST00000362715 117 ntBASIC2.88□□□□□ -1.95
NKX3-1Q99801 RNU6-181P-201ENST00000363225 107 ntBASIC2.88□□□□□ -1.95
NKX3-1Q99801 RNU5E-6P-201ENST00000365574 115 ntBASIC2.88□□□□□ -1.95
NKX3-1Q99801 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
NKX3-1Q99801 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC2.88□□□□□ -1.95
NKX3-1Q99801 SNORD17-201ENST00000390930 237 ntBASIC2.88□□□□□ -1.95
NKX3-1Q99801 AL139397.2-201ENST00000404529 772 ntBASIC2.88□□□□□ -1.95
NKX3-1Q99801 BX323014.1-201ENST00000412876 237 ntBASIC2.88□□□□□ -1.95
NKX3-1Q99801 PIGFP2-201ENST00000421400 651 ntBASIC2.88□□□□□ -1.95
NKX3-1Q99801 AC012498.1-201ENST00000424037 437 ntBASIC2.88□□□□□ -1.95
NKX3-1Q99801 RPL23AP69-201ENST00000431134 458 ntBASIC2.88□□□□□ -1.95
NKX3-1Q99801 USP12PX-201ENST00000432383 1057 ntBASIC2.88□□□□□ -1.95
NKX3-1Q99801 RPL23AP30-201ENST00000432419 501 ntBASIC2.88□□□□□ -1.95
NKX3-1Q99801 AL451074.3-201ENST00000437709 472 ntBASIC2.88□□□□□ -1.95
NKX3-1Q99801 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC2.88□□□□□ -1.95
NKX3-1Q99801 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC2.88□□□□□ -1.95
NKX3-1Q99801 RPL21P23-201ENST00000446654 460 ntBASIC2.88□□□□□ -1.95
NKX3-1Q99801 AC125238.1-201ENST00000448842 249 ntBASIC2.88□□□□□ -1.95
NKX3-1Q99801 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC2.88□□□□□ -1.95
NKX3-1Q99801 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC2.88□□□□□ -1.95
NKX3-1Q99801 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC2.88□□□□□ -1.95
NKX3-1Q99801 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC2.88□□□□□ -1.95
NKX3-1Q99801 RPS3AP17-201ENST00000472594 777 ntBASIC2.88□□□□□ -1.95
NKX3-1Q99801 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
NKX3-1Q99801 CDC42P4-201ENST00000510507 563 ntBASIC2.88□□□□□ -1.95
NKX3-1Q99801 AL359273.1-201ENST00000510918 627 ntBASIC2.88□□□□□ -1.95
NKX3-1Q99801 TTC39CP1-201ENST00000512513 755 ntBASIC2.88□□□□□ -1.95
NKX3-1Q99801 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC2.88□□□□□ -1.95
NKX3-1Q99801 RNU6-1256P-201ENST00000516539 103 ntBASIC2.88□□□□□ -1.95
NKX3-1Q99801 RNU6-445P-201ENST00000516949 107 ntBASIC2.88□□□□□ -1.95
NKX3-1Q99801 AC090572.1-201ENST00000519251 160 ntBASIC2.88□□□□□ -1.95
NKX3-1Q99801 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC2.88□□□□□ -1.95
NKX3-1Q99801 AC093012.1-202ENST00000549403 582 ntBASIC2.88□□□□□ -1.95
NKX3-1Q99801 AL355836.1-201ENST00000555951 870 ntBASIC2.88□□□□□ -1.95
NKX3-1Q99801 AC245505.1-201ENST00000556398 224 ntBASIC2.88□□□□□ -1.95
NKX3-1Q99801 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC2.88□□□□□ -1.95
NKX3-1Q99801 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC2.88□□□□□ -1.95
NKX3-1Q99801 AL391840.1-201ENST00000571144 367 ntBASIC2.88□□□□□ -1.95
NKX3-1Q99801 AC005951.1-201ENST00000576706 485 ntBASIC2.88□□□□□ -1.95
NKX3-1Q99801 AC006557.5-201ENST00000603126 811 ntBASIC2.88□□□□□ -1.95
NKX3-1Q99801 AC245014.2-201ENST00000603689 287 ntBASIC2.88□□□□□ -1.95
NKX3-1Q99801 AC013553.2-201ENST00000604244 589 ntBASIC2.88□□□□□ -1.95
NKX3-1Q99801 AL162713.1-201ENST00000604480 262 ntBASIC2.88□□□□□ -1.95
NKX3-1Q99801 AC246785.4-201ENST00000605374 287 ntBASIC2.88□□□□□ -1.95
NKX3-1Q99801 AL390240.1-201ENST00000612950 384 ntBASIC2.88□□□□□ -1.95
NKX3-1Q99801 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC2.88□□□□□ -1.95
NKX3-1Q99801 AC015540.1-201ENST00000615828 501 ntBASIC2.88□□□□□ -1.95
NKX3-1Q99801 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC2.88□□□□□ -1.95
NKX3-1Q99801 SNORA50A-202ENST00000629536 136 ntBASIC2.88□□□□□ -1.95
NKX3-1Q99801 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC2.88□□□□□ -1.95
NKX3-1Q99801 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC2.88□□□□□ -1.95
NKX3-1Q99801 CR848007.1-201ENST00000442354 1699 ntBASIC2.88□□□□□ -1.95
NKX3-1Q99801 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC2.88□□□□□ -1.95
NKX3-1Q99801 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
NKX3-1Q99801 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC2.88□□□□□ -1.95
NKX3-1Q99801 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
NKX3-1Q99801 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC2.87□□□□□ -1.95
NKX3-1Q99801 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
NKX3-1Q99801 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC2.87□□□□□ -1.95
NKX3-1Q99801 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC2.87□□□□□ -1.95
NKX3-1Q99801 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
NKX3-1Q99801 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
NKX3-1Q99801 RNU6-1042P-201ENST00000384204 107 ntBASIC2.87□□□□□ -1.95
NKX3-1Q99801 NDUFS5P1-201ENST00000405668 289 ntBASIC2.87□□□□□ -1.95
NKX3-1Q99801 SNORA11.1-201ENST00000408133 129 ntBASIC2.87□□□□□ -1.95
NKX3-1Q99801 RNA5SP293-201ENST00000410527 113 ntBASIC2.87□□□□□ -1.95
NKX3-1Q99801 AC245291.1-201ENST00000419501 328 ntBASIC2.87□□□□□ -1.95
NKX3-1Q99801 AL451054.2-201ENST00000420896 202 ntBASIC2.87□□□□□ -1.95
NKX3-1Q99801 RPL7L1P10-201ENST00000427790 463 ntBASIC2.87□□□□□ -1.95
NKX3-1Q99801 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC2.87□□□□□ -1.95
NKX3-1Q99801 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC2.87□□□□□ -1.95
NKX3-1Q99801 MTCO2P11-201ENST00000431069 680 ntBASIC2.87□□□□□ -1.95
NKX3-1Q99801 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC2.87□□□□□ -1.95
NKX3-1Q99801 RPS15AP9-201ENST00000439856 381 ntBASIC2.87□□□□□ -1.95
NKX3-1Q99801 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC2.87□□□□□ -1.95
NKX3-1Q99801 MTND2P24-201ENST00000453434 806 ntBASIC2.87□□□□□ -1.95
NKX3-1Q99801 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC2.87□□□□□ -1.95
NKX3-1Q99801 C1DP4-201ENST00000455429 424 ntBASIC2.87□□□□□ -1.95
NKX3-1Q99801 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC2.87□□□□□ -1.95
NKX3-1Q99801 RPS20P20-201ENST00000460498 340 ntBASIC2.87□□□□□ -1.95
NKX3-1Q99801 MTCO2P29-201ENST00000465212 189 ntBASIC2.87□□□□□ -1.95
NKX3-1Q99801 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC2.87□□□□□ -1.95
NKX3-1Q99801 AC012181.1-201ENST00000479895 423 ntBASIC2.87□□□□□ -1.95
NKX3-1Q99801 RN7SL293P-201ENST00000481765 281 ntBASIC2.87□□□□□ -1.95
NKX3-1Q99801 KCTD9P5-201ENST00000504141 1170 ntBASIC2.87□□□□□ -1.95
NKX3-1Q99801 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC2.87□□□□□ -1.95
NKX3-1Q99801 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC2.87□□□□□ -1.95
NKX3-1Q99801 AC091133.4-201ENST00000511142 308 ntBASIC2.87□□□□□ -1.95
NKX3-1Q99801 RNU6-720P-201ENST00000516363 108 ntBASIC2.87□□□□□ -1.95
NKX3-1Q99801 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC2.87□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms