Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 MIR4635-201ENST00000583759 79 ntBASIC3.01□□□□□ -1.93
CCDC43Q96MW1 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.01□□□□□ -1.93
CCDC43Q96MW1 BNIP3P23-201ENST00000599655 511 ntBASIC3.01□□□□□ -1.93
CCDC43Q96MW1 AC239868.4-201ENST00000608318 671 ntBASIC3.01□□□□□ -1.93
CCDC43Q96MW1 AC005046.1-201ENST00000608515 625 ntBASIC3.01□□□□□ -1.93
CCDC43Q96MW1 AL161734.1-201ENST00000609720 557 ntBASIC3.01□□□□□ -1.93
CCDC43Q96MW1 AC008498.1-201ENST00000613012 531 ntBASIC3.01□□□□□ -1.93
CCDC43Q96MW1 OR4G3P-201ENST00000633500 913 ntBASIC3.01□□□□□ -1.93
CCDC43Q96MW1 AC006927.4-201ENST00000639187 543 ntBASIC3.01□□□□□ -1.93
CCDC43Q96MW1 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC3.01□□□□□ -1.93
CCDC43Q96MW1 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC3.01□□□□□ -1.93
CCDC43Q96MW1 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC3.01□□□□□ -1.93
CCDC43Q96MW1 CCT4P2-201ENST00000233836 1548 ntBASIC3□□□□□ -1.93
CCDC43Q96MW1 AGL-204ENST00000370161 6923 ntTSL 5 BASIC3□□□□□ -1.93
CCDC43Q96MW1 SET-203ENST00000372688 801 ntTSL 2 BASIC3□□□□□ -1.93
CCDC43Q96MW1 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC3□□□□□ -1.93
CCDC43Q96MW1 RNA5SP184-201ENST00000411071 108 ntBASIC3□□□□□ -1.93
CCDC43Q96MW1 USP9YP13-201ENST00000417797 480 ntBASIC3□□□□□ -1.93
CCDC43Q96MW1 USP9YP26-201ENST00000421008 661 ntBASIC3□□□□□ -1.93
CCDC43Q96MW1 AC019097.1-201ENST00000424783 735 ntBASIC3□□□□□ -1.93
CCDC43Q96MW1 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC3□□□□□ -1.93
CCDC43Q96MW1 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC3□□□□□ -1.93
CCDC43Q96MW1 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC3□□□□□ -1.93
CCDC43Q96MW1 RPL36AP6-201ENST00000435770 321 ntBASIC3□□□□□ -1.93
CCDC43Q96MW1 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC3□□□□□ -1.93
CCDC43Q96MW1 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC3□□□□□ -1.93
CCDC43Q96MW1 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC3□□□□□ -1.93
CCDC43Q96MW1 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC3□□□□□ -1.93
CCDC43Q96MW1 AC020550.1-201ENST00000447385 163 ntBASIC3□□□□□ -1.93
CCDC43Q96MW1 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC3□□□□□ -1.93
CCDC43Q96MW1 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC3□□□□□ -1.93
CCDC43Q96MW1 AC004924.1-201ENST00000480160 781 ntBASIC3□□□□□ -1.93
CCDC43Q96MW1 AC104685.1-201ENST00000502445 371 ntBASIC3□□□□□ -1.93
CCDC43Q96MW1 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC3□□□□□ -1.93
CCDC43Q96MW1 AC113155.1-201ENST00000511141 769 ntBASIC3□□□□□ -1.93
CCDC43Q96MW1 MTND5P13-201ENST00000513046 1079 ntBASIC3□□□□□ -1.93
CCDC43Q96MW1 RNA5SP290-201ENST00000517133 127 ntBASIC3□□□□□ -1.93
CCDC43Q96MW1 AC013828.2-201ENST00000532487 235 ntBASIC3□□□□□ -1.93
CCDC43Q96MW1 MAL2-203ENST00000534619 578 ntTSL 4 BASIC3□□□□□ -1.93
CCDC43Q96MW1 AL157394.1-201ENST00000562983 1224 ntBASIC3□□□□□ -1.93
CCDC43Q96MW1 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC3□□□□□ -1.93
CCDC43Q96MW1 OR1M4P-201ENST00000589199 287 ntBASIC3□□□□□ -1.93
CCDC43Q96MW1 AC092106.3-201ENST00000611308 722 ntBASIC3□□□□□ -1.93
CCDC43Q96MW1 AL359198.2-201ENST00000611836 194 ntBASIC3□□□□□ -1.93
CCDC43Q96MW1 AC092608.2-201ENST00000624427 218 ntBASIC3□□□□□ -1.93
CCDC43Q96MW1 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC3□□□□□ -1.93
CCDC43Q96MW1 AC103706.2-201ENST00000638080 240 ntBASIC3□□□□□ -1.93
CCDC43Q96MW1 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3□□□□□ -1.93
CCDC43Q96MW1 AC092447.7-201ENST00000422212 1621 ntBASIC3□□□□□ -1.93
CCDC43Q96MW1 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
CCDC43Q96MW1 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3□□□□□ -1.93
CCDC43Q96MW1 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.99□□□□□ -1.93
CCDC43Q96MW1 ZNF876P-202ENST00000398732 1485 ntBASIC2.99□□□□□ -1.93
CCDC43Q96MW1 FAM133CP-201ENST00000332869 704 ntBASIC2.99□□□□□ -1.93
CCDC43Q96MW1 RNA5SP88-201ENST00000365560 109 ntBASIC2.99□□□□□ -1.93
CCDC43Q96MW1 MIR513B-201ENST00000385136 84 ntBASIC2.99□□□□□ -1.93
CCDC43Q96MW1 SNORA26.7-201ENST00000391288 122 ntBASIC2.99□□□□□ -1.93
CCDC43Q96MW1 AL360182.1-201ENST00000397433 468 ntBASIC2.99□□□□□ -1.93
CCDC43Q96MW1 MIR888-201ENST00000401186 77 ntBASIC2.99□□□□□ -1.93
CCDC43Q96MW1 RNU6-584P-201ENST00000410350 95 ntBASIC2.99□□□□□ -1.93
CCDC43Q96MW1 AC023141.4-201ENST00000412031 328 ntBASIC2.99□□□□□ -1.93
CCDC43Q96MW1 AC010153.1-201ENST00000432862 727 ntBASIC2.99□□□□□ -1.93
CCDC43Q96MW1 MTND1P32-201ENST00000433043 938 ntBASIC2.99□□□□□ -1.93
CCDC43Q96MW1 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.99□□□□□ -1.93
CCDC43Q96MW1 CR769776.1-201ENST00000441254 787 ntBASIC2.99□□□□□ -1.93
CCDC43Q96MW1 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC2.99□□□□□ -1.93
CCDC43Q96MW1 DPPA3P1-201ENST00000448050 469 ntBASIC2.99□□□□□ -1.93
CCDC43Q96MW1 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC2.99□□□□□ -1.93
CCDC43Q96MW1 RPL26P9-201ENST00000457466 433 ntBASIC2.99□□□□□ -1.93
CCDC43Q96MW1 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC2.99□□□□□ -1.93
CCDC43Q96MW1 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.99□□□□□ -1.93
CCDC43Q96MW1 GTF2IP9-201ENST00000502460 301 ntBASIC2.99□□□□□ -1.93
CCDC43Q96MW1 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC2.99□□□□□ -1.93
CCDC43Q96MW1 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC2.99□□□□□ -1.93
CCDC43Q96MW1 LTV1P1-201ENST00000510683 1237 ntBASIC2.99□□□□□ -1.93
CCDC43Q96MW1 AC096725.1-201ENST00000514266 313 ntBASIC2.99□□□□□ -1.93
CCDC43Q96MW1 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC2.99□□□□□ -1.93
CCDC43Q96MW1 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC2.99□□□□□ -1.93
CCDC43Q96MW1 AC090136.1-201ENST00000520009 240 ntBASIC2.99□□□□□ -1.93
CCDC43Q96MW1 AC022634.1-201ENST00000520765 532 ntBASIC2.99□□□□□ -1.93
CCDC43Q96MW1 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC2.99□□□□□ -1.93
CCDC43Q96MW1 SUB1P1-201ENST00000524415 382 ntBASIC2.99□□□□□ -1.93
CCDC43Q96MW1 ZDHHC20P3-201ENST00000531576 336 ntBASIC2.99□□□□□ -1.93
CCDC43Q96MW1 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
CCDC43Q96MW1 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
CCDC43Q96MW1 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC2.99□□□□□ -1.93
CCDC43Q96MW1 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC2.99□□□□□ -1.93
CCDC43Q96MW1 AC090616.3-201ENST00000582184 217 ntBASIC2.99□□□□□ -1.93
CCDC43Q96MW1 DPPA3P3-201ENST00000603842 430 ntBASIC2.99□□□□□ -1.93
CCDC43Q96MW1 AP003485.2-201ENST00000623636 610 ntBASIC2.99□□□□□ -1.93
CCDC43Q96MW1 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.99□□□□□ -1.93
CCDC43Q96MW1 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC2.99□□□□□ -1.93
CCDC43Q96MW1 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.99□□□□□ -1.93
CCDC43Q96MW1 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.99□□□□□ -1.93
CCDC43Q96MW1 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
CCDC43Q96MW1 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC2.98□□□□□ -1.93
CCDC43Q96MW1 RNU6-769P-201ENST00000384407 104 ntBASIC2.98□□□□□ -1.93
CCDC43Q96MW1 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC2.98□□□□□ -1.93
CCDC43Q96MW1 AC098614.2-201ENST00000426040 255 ntBASIC2.98□□□□□ -1.93
CCDC43Q96MW1 AC244035.1-201ENST00000430042 390 ntBASIC2.98□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 114.5 ms