Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 RN7SKP272-201ENST00000516988 232 ntBASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 AC107016.2-201ENST00000547968 190 ntBASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 MRPS36P5-201ENST00000551909 298 ntBASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 AC023813.2-201ENST00000564321 469 ntBASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 AL451007.1-201ENST00000595491 289 ntBASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 AC234772.3-201ENST00000602277 528 ntBASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 AC093424.1-201ENST00000604999 338 ntBASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 AC006270.3-201ENST00000605967 1036 ntBASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 AC087683.2-201ENST00000611384 326 ntBASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 UGP2-231ENST00000627474 264 ntTSL 5 BASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 PCMTD1P7-201ENST00000634506 357 ntBASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 MIR3199-2-201ENST00000636243 86 ntBASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 AC000403.1-201ENST00000613696 3585 ntBASIC2.69□□□□□ -1.98
ZNF540Q8NDQ6 AC006378.2-201ENST00000623178 2476 ntBASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 AC073325.2-201ENST00000339545 159 ntBASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 SNORA7.4-201ENST00000384249 137 ntBASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 RPL26P27-201ENST00000414397 437 ntBASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 AL513175.2-201ENST00000422071 443 ntBASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 RPL36AP6-201ENST00000435770 321 ntBASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 AL831737.1-201ENST00000441288 271 ntBASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 AC016696.1-201ENST00000446949 318 ntBASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 RSL24D1P3-201ENST00000449255 495 ntBASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 AC008481.1-201ENST00000463278 396 ntBASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 AC008571.1-201ENST00000467232 300 ntBASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 AC128713.1-201ENST00000471495 306 ntBASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 AC068587.2-201ENST00000478386 781 ntBASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 RN7SL297P-201ENST00000483161 293 ntBASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 RPS15AP36-201ENST00000492022 382 ntBASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 RNU6-390P-201ENST00000516259 103 ntBASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 AC106782.4-201ENST00000568264 210 ntBASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 MIR4658-201ENST00000584344 65 ntBASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 OR10AB1P-201ENST00000609613 938 ntBASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 AC090115.4-201ENST00000609970 188 ntBASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 HMGB1P24-202ENST00000615653 685 ntBASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 AC097655.1-201ENST00000635075 318 ntBASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 AC010889.1-201ENST00000566193 2666 ntBASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 AC131280.1-202ENST00000624067 4211 ntBASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 AC080128.1-201ENST00000474389 1917 ntBASIC2.68□□□□□ -1.98
ZNF540Q8NDQ6 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
ZNF540Q8NDQ6 SNORA71.1-201ENST00000364523 117 ntBASIC2.67□□□□□ -1.98
ZNF540Q8NDQ6 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
ZNF540Q8NDQ6 AL136310.1-201ENST00000404926 654 ntBASIC2.67□□□□□ -1.98
ZNF540Q8NDQ6 USP9YP33-201ENST00000412220 421 ntBASIC2.67□□□□□ -1.98
ZNF540Q8NDQ6 ELOCP9-201ENST00000418624 239 ntBASIC2.67□□□□□ -1.98
ZNF540Q8NDQ6 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC2.67□□□□□ -1.98
ZNF540Q8NDQ6 AC022018.1-201ENST00000430685 241 ntBASIC2.67□□□□□ -1.98
ZNF540Q8NDQ6 MICF-203ENST00000432679 129 ntBASIC2.67□□□□□ -1.98
ZNF540Q8NDQ6 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC2.67□□□□□ -1.98
ZNF540Q8NDQ6 USP9YP35-201ENST00000435696 412 ntBASIC2.67□□□□□ -1.98
ZNF540Q8NDQ6 CR769776.1-201ENST00000441254 787 ntBASIC2.67□□□□□ -1.98
ZNF540Q8NDQ6 Z73417.1-201ENST00000447373 778 ntBASIC2.67□□□□□ -1.98
ZNF540Q8NDQ6 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC2.67□□□□□ -1.98
ZNF540Q8NDQ6 MRPL42P6-201ENST00000486397 371 ntBASIC2.67□□□□□ -1.98
ZNF540Q8NDQ6 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC2.67□□□□□ -1.98
ZNF540Q8NDQ6 AC023141.11-201ENST00000508864 202 ntBASIC2.67□□□□□ -1.98
ZNF540Q8NDQ6 RNU6-311P-201ENST00000516224 102 ntBASIC2.67□□□□□ -1.98
ZNF540Q8NDQ6 RNU1-103P-201ENST00000516502 125 ntBASIC2.67□□□□□ -1.98
ZNF540Q8NDQ6 RNU6-826P-201ENST00000516827 104 ntBASIC2.67□□□□□ -1.98
ZNF540Q8NDQ6 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.67□□□□□ -1.98
ZNF540Q8NDQ6 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC2.67□□□□□ -1.98
ZNF540Q8NDQ6 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC2.67□□□□□ -1.98
ZNF540Q8NDQ6 MTCO2P15-201ENST00000532655 656 ntBASIC2.67□□□□□ -1.98
ZNF540Q8NDQ6 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC2.67□□□□□ -1.98
ZNF540Q8NDQ6 MIR4513-201ENST00000581077 86 ntBASIC2.67□□□□□ -1.98
ZNF540Q8NDQ6 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC2.67□□□□□ -1.98
ZNF540Q8NDQ6 AP000403.1-201ENST00000603349 851 ntBASIC2.67□□□□□ -1.98
ZNF540Q8NDQ6 AL355598.1-201ENST00000604169 202 ntBASIC2.67□□□□□ -1.98
ZNF540Q8NDQ6 HNRNPDLP4-201ENST00000605144 301 ntBASIC2.67□□□□□ -1.98
ZNF540Q8NDQ6 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.67□□□□□ -1.98
ZNF540Q8NDQ6 AL355493.4-201ENST00000618530 292 ntBASIC2.67□□□□□ -1.98
ZNF540Q8NDQ6 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC2.67□□□□□ -1.98
ZNF540Q8NDQ6 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC2.67□□□□□ -1.98
ZNF540Q8NDQ6 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC2.67□□□□□ -1.98
ZNF540Q8NDQ6 AC026422.1-201ENST00000623961 452 ntBASIC2.67□□□□□ -1.98
ZNF540Q8NDQ6 MIR203B-201ENST00000636080 86 ntBASIC2.67□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms