Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 RNU6-15P-201ENST00000384534 107 ntBASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 RNU6-2-201ENST00000384627 107 ntBASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 RNU6-29P-201ENST00000384637 107 ntBASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 RNU6-9-201ENST00000384776 107 ntBASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 RNU6-33P-201ENST00000384793 107 ntBASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 SNORD73A-201ENST00000386062 65 ntBASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 HMGN1P20-201ENST00000411849 300 ntBASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 RHOT1P3-201ENST00000436571 331 ntBASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 MRPS31P2-201ENST00000451581 518 ntBASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 HMGN2P7-201ENST00000456186 273 ntBASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 AC006026.2-201ENST00000457376 180 ntBASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 AC023141.9-201ENST00000458734 412 ntBASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 RNA5SP438-201ENST00000516561 112 ntBASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 SNORA70.20-201ENST00000516848 126 ntBASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 RNU6-928P-201ENST00000516876 104 ntBASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 TRMT10BP1-201ENST00000519377 943 ntBASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 APOOP3-201ENST00000536787 586 ntBASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 NACAP3-201ENST00000552100 481 ntBASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 LINC02406-201ENST00000553029 546 ntTSL 3 BASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 AC084783.1-201ENST00000565846 910 ntBASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 AC069061.3-201ENST00000582254 823 ntBASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 AC244505.7-201ENST00000599675 272 ntBASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 AC012468.1-201ENST00000604888 430 ntBASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 RNU6-6P-201ENST00000606623 107 ntBASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 AC084781.2-201ENST00000615568 161 ntBASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 MIR6071-201ENST00000616741 78 ntBASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 AC098657.3-201ENST00000620434 263 ntBASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 C4BPAP1-201ENST00000415474 1893 ntBASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 AC106871.1-201ENST00000568324 3102 ntBASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 MIR375-201ENST00000362103 64 ntBASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 MIR423-201ENST00000362201 94 ntBASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 RNA5SP273-201ENST00000362484 113 ntBASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 RNA5SP295-201ENST00000362655 121 ntBASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 U3.2-201ENST00000362981 210 ntBASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 RNA5SP90-201ENST00000364801 99 ntBASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 RNA5SP22-201ENST00000365393 109 ntBASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 RNA5SP131-201ENST00000365452 119 ntBASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 RN7SKP269-201ENST00000365545 319 ntBASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 RNU6-328P-201ENST00000390887 106 ntBASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 RNU4-25P-201ENST00000410569 230 ntBASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 RNA5SP306-201ENST00000411087 107 ntBASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 SNORD56-201ENST00000413522 71 ntBASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 MTCO2P12-201ENST00000427426 682 ntBASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 RPL23AP82-202ENST00000427528 469 ntBASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 RPS15AP10-201ENST00000432472 382 ntBASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 AC104634.1-201ENST00000452720 462 ntBASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 RPL26P9-201ENST00000457466 433 ntBASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 Y_RNA.653-201ENST00000459091 95 ntBASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 AL132838.2-201ENST00000492041 314 ntBASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 AC008638.1-201ENST00000506035 866 ntBASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 AC113155.1-201ENST00000511141 769 ntBASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 LINC00933-203ENST00000559812 219 ntBASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 AL160281.1-201ENST00000605307 311 ntBASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 AL161423.1-201ENST00000613700 262 ntBASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 AL138880.2-201ENST00000616214 239 ntBASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 PISRT1.1-201ENST00000616930 107 ntBASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 AC090971.5-201ENST00000621102 293 ntBASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 AL353746.1-201ENST00000566293 6881 ntBASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 AL136164.4-201ENST00000625013 2135 ntBASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms