Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC3.33□□□□□ -1.88
NPHP3Q7Z494 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC3.33□□□□□ -1.88
NPHP3Q7Z494 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
NPHP3Q7Z494 MIR1291-201ENST00000627649 87 ntBASIC3.33□□□□□ -1.88
NPHP3Q7Z494 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
NPHP3Q7Z494 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
NPHP3Q7Z494 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
NPHP3Q7Z494 RNU1-91P-201ENST00000364746 163 ntBASIC3.32□□□□□ -1.88
NPHP3Q7Z494 MIR493-201ENST00000385254 89 ntBASIC3.32□□□□□ -1.88
NPHP3Q7Z494 AL136372.1-201ENST00000403060 228 ntBASIC3.32□□□□□ -1.88
NPHP3Q7Z494 AL356131.1-201ENST00000405826 414 ntBASIC3.32□□□□□ -1.88
NPHP3Q7Z494 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC3.32□□□□□ -1.88
NPHP3Q7Z494 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC3.32□□□□□ -1.88
NPHP3Q7Z494 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC3.32□□□□□ -1.88
NPHP3Q7Z494 AC234781.2-201ENST00000426370 994 ntBASIC3.32□□□□□ -1.88
NPHP3Q7Z494 EZH2P1-201ENST00000431167 291 ntBASIC3.32□□□□□ -1.88
NPHP3Q7Z494 SNRPEP4-201ENST00000435815 279 ntBASIC3.32□□□□□ -1.88
NPHP3Q7Z494 AL121871.1-201ENST00000443413 436 ntBASIC3.32□□□□□ -1.88
NPHP3Q7Z494 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.32□□□□□ -1.88
NPHP3Q7Z494 GSTA11P-201ENST00000452866 669 ntBASIC3.32□□□□□ -1.88
NPHP3Q7Z494 FAM172BP-201ENST00000487497 1089 ntBASIC3.32□□□□□ -1.88
NPHP3Q7Z494 HMGB1P36-201ENST00000487709 576 ntBASIC3.32□□□□□ -1.88
NPHP3Q7Z494 CKS1BP2-201ENST00000497342 240 ntBASIC3.32□□□□□ -1.88
NPHP3Q7Z494 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC3.32□□□□□ -1.88
NPHP3Q7Z494 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC3.32□□□□□ -1.88
NPHP3Q7Z494 MEPE-206ENST00000511670 550 ntTSL 4 BASIC3.32□□□□□ -1.88
NPHP3Q7Z494 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC3.32□□□□□ -1.88
NPHP3Q7Z494 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC3.32□□□□□ -1.88
NPHP3Q7Z494 RNU6-711P-201ENST00000517255 106 ntBASIC3.32□□□□□ -1.88
NPHP3Q7Z494 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC3.32□□□□□ -1.88
NPHP3Q7Z494 NAP1L1P1-201ENST00000524793 1063 ntBASIC3.32□□□□□ -1.88
NPHP3Q7Z494 AC239860.2-201ENST00000525886 270 ntBASIC3.32□□□□□ -1.88
NPHP3Q7Z494 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC3.32□□□□□ -1.88
NPHP3Q7Z494 OR7K1P-201ENST00000546439 926 ntBASIC3.32□□□□□ -1.88
NPHP3Q7Z494 AL355836.1-201ENST00000555951 870 ntBASIC3.32□□□□□ -1.88
NPHP3Q7Z494 ISCA1P3-201ENST00000577104 373 ntBASIC3.32□□□□□ -1.88
NPHP3Q7Z494 OR4K8P-201ENST00000578842 1048 ntBASIC3.32□□□□□ -1.88
NPHP3Q7Z494 BBIP1P1-201ENST00000602999 279 ntBASIC3.32□□□□□ -1.88
NPHP3Q7Z494 DUXAP11-201ENST00000603858 526 ntBASIC3.32□□□□□ -1.88
NPHP3Q7Z494 AC022079.1-201ENST00000621546 602 ntBASIC3.32□□□□□ -1.88
NPHP3Q7Z494 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
NPHP3Q7Z494 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
NPHP3Q7Z494 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.31□□□□□ -1.88
NPHP3Q7Z494 AL356473.1-201ENST00000406203 1408 ntBASIC3.31□□□□□ -1.88
NPHP3Q7Z494 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
NPHP3Q7Z494 DDX43P2-201ENST00000604753 1354 ntBASIC3.31□□□□□ -1.88
NPHP3Q7Z494 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
NPHP3Q7Z494 RNU6-28P-201ENST00000362378 107 ntBASIC3.31□□□□□ -1.88
NPHP3Q7Z494 MIR135A2-201ENST00000384854 100 ntBASIC3.31□□□□□ -1.88
NPHP3Q7Z494 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC3.31□□□□□ -1.88
NPHP3Q7Z494 USP9YP26-201ENST00000421008 661 ntBASIC3.31□□□□□ -1.88
NPHP3Q7Z494 DNAJA1P2-201ENST00000421360 1197 ntBASIC3.31□□□□□ -1.88
NPHP3Q7Z494 RPS6P15-201ENST00000431996 751 ntBASIC3.31□□□□□ -1.88
NPHP3Q7Z494 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC3.31□□□□□ -1.88
NPHP3Q7Z494 AL353691.1-201ENST00000451332 387 ntBASIC3.31□□□□□ -1.88
NPHP3Q7Z494 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.31□□□□□ -1.88
NPHP3Q7Z494 AC104308.1-201ENST00000454621 333 ntBASIC3.31□□□□□ -1.88
NPHP3Q7Z494 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC3.31□□□□□ -1.88
NPHP3Q7Z494 RN7SKP282-201ENST00000516824 299 ntBASIC3.31□□□□□ -1.88
NPHP3Q7Z494 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC3.31□□□□□ -1.88
NPHP3Q7Z494 OR6C7P-201ENST00000547875 934 ntBASIC3.31□□□□□ -1.88
NPHP3Q7Z494 AP000811.1-201ENST00000603803 651 ntBASIC3.31□□□□□ -1.88
NPHP3Q7Z494 AC004853.1-201ENST00000604902 698 ntBASIC3.31□□□□□ -1.88
NPHP3Q7Z494 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC3.31□□□□□ -1.88
NPHP3Q7Z494 AL031667.3-201ENST00000620124 655 ntBASIC3.31□□□□□ -1.88
NPHP3Q7Z494 AL445264.1-201ENST00000621719 171 ntBASIC3.31□□□□□ -1.88
NPHP3Q7Z494 AC110994.2-201ENST00000635481 492 ntBASIC3.31□□□□□ -1.88
NPHP3Q7Z494 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC3.31□□□□□ -1.88
NPHP3Q7Z494 MIR6733-201ENST00000635723 61 ntBASIC3.31□□□□□ -1.88
NPHP3Q7Z494 HSPA8P4-201ENST00000511877 1920 ntBASIC3.3□□□□□ -1.88
NPHP3Q7Z494 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.3□□□□□ -1.88
NPHP3Q7Z494 RNU6-723P-201ENST00000383973 107 ntBASIC3.3□□□□□ -1.88
NPHP3Q7Z494 Y_RNA.548-201ENST00000384656 105 ntBASIC3.3□□□□□ -1.88
NPHP3Q7Z494 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
NPHP3Q7Z494 RNU1-101P-201ENST00000391171 127 ntBASIC3.3□□□□□ -1.88
NPHP3Q7Z494 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC3.3□□□□□ -1.88
NPHP3Q7Z494 BEND7P1-201ENST00000422058 457 ntBASIC3.3□□□□□ -1.88
NPHP3Q7Z494 MTCO2P5-201ENST00000422621 426 ntBASIC3.3□□□□□ -1.88
NPHP3Q7Z494 AC233728.2-201ENST00000425348 757 ntBASIC3.3□□□□□ -1.88
NPHP3Q7Z494 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC3.3□□□□□ -1.88
NPHP3Q7Z494 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC3.3□□□□□ -1.88
NPHP3Q7Z494 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC3.3□□□□□ -1.88
NPHP3Q7Z494 LSM1P1-201ENST00000438629 273 ntBASIC3.3□□□□□ -1.88
NPHP3Q7Z494 OR6K5P-201ENST00000447050 945 ntBASIC3.3□□□□□ -1.88
NPHP3Q7Z494 RPL23AP49-201ENST00000492925 468 ntBASIC3.3□□□□□ -1.88
NPHP3Q7Z494 RNU6-759P-201ENST00000516740 103 ntBASIC3.3□□□□□ -1.88
NPHP3Q7Z494 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC3.3□□□□□ -1.88
NPHP3Q7Z494 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
NPHP3Q7Z494 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.3□□□□□ -1.88
NPHP3Q7Z494 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC3.3□□□□□ -1.88
NPHP3Q7Z494 CLIC4P2-201ENST00000601934 717 ntBASIC3.3□□□□□ -1.88
NPHP3Q7Z494 AL357094.1-201ENST00000603845 844 ntBASIC3.3□□□□□ -1.88
NPHP3Q7Z494 AC104237.2-201ENST00000612456 443 ntBASIC3.3□□□□□ -1.88
NPHP3Q7Z494 AC087359.1-201ENST00000508335 1740 ntBASIC3.3□□□□□ -1.88
NPHP3Q7Z494 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.3□□□□□ -1.88
NPHP3Q7Z494 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.3□□□□□ -1.88
NPHP3Q7Z494 OR4G2P-202ENST00000641004 1759 ntBASIC3.3□□□□□ -1.88
NPHP3Q7Z494 AL513185.3-201ENST00000433335 1300 ntBASIC3.3□□□□□ -1.88
NPHP3Q7Z494 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
NPHP3Q7Z494 AGL-204ENST00000370161 6923 ntTSL 5 BASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 98.9 ms