Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 SNORA9-201ENST00000384215 133 ntBASIC2.34□□□□□ -2.03
RFX4Q33E94 RNU6-769P-201ENST00000384407 104 ntBASIC2.34□□□□□ -2.03
RFX4Q33E94 MIR325-201ENST00000385260 98 ntBASIC2.34□□□□□ -2.03
RFX4Q33E94 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC2.34□□□□□ -2.03
RFX4Q33E94 RNU6-754P-201ENST00000391166 107 ntBASIC2.34□□□□□ -2.03
RFX4Q33E94 AL356057.3-201ENST00000402607 340 ntBASIC2.34□□□□□ -2.03
RFX4Q33E94 AC091390.3-201ENST00000426478 338 ntBASIC2.34□□□□□ -2.03
RFX4Q33E94 AL365496.1-201ENST00000426885 215 ntBASIC2.34□□□□□ -2.03
RFX4Q33E94 AC008850.1-201ENST00000427546 362 ntBASIC2.34□□□□□ -2.03
RFX4Q33E94 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC2.34□□□□□ -2.03
RFX4Q33E94 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC2.34□□□□□ -2.03
RFX4Q33E94 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.34□□□□□ -2.03
RFX4Q33E94 FAM103A2P-201ENST00000444122 354 ntBASIC2.34□□□□□ -2.03
RFX4Q33E94 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC2.34□□□□□ -2.03
RFX4Q33E94 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.34□□□□□ -2.03
RFX4Q33E94 ATG12P2-201ENST00000456830 416 ntBASIC2.34□□□□□ -2.03
RFX4Q33E94 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC2.34□□□□□ -2.03
RFX4Q33E94 RPL30P5-201ENST00000494923 336 ntBASIC2.34□□□□□ -2.03
RFX4Q33E94 AC080014.1-201ENST00000496877 1201 ntBASIC2.34□□□□□ -2.03
RFX4Q33E94 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC2.34□□□□□ -2.03
RFX4Q33E94 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC2.34□□□□□ -2.03
RFX4Q33E94 SCARNA15.2-201ENST00000516409 127 ntBASIC2.34□□□□□ -2.03
RFX4Q33E94 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC2.34□□□□□ -2.03
RFX4Q33E94 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
RFX4Q33E94 AC013828.2-201ENST00000532487 235 ntBASIC2.34□□□□□ -2.03
RFX4Q33E94 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC2.34□□□□□ -2.03
RFX4Q33E94 APAF1-207ENST00000547743 651 ntTSL 3 BASIC2.34□□□□□ -2.03
RFX4Q33E94 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC2.34□□□□□ -2.03
RFX4Q33E94 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC2.34□□□□□ -2.03
RFX4Q33E94 AC009163.5-201ENST00000575421 637 ntBASIC2.34□□□□□ -2.03
RFX4Q33E94 AL451007.1-201ENST00000595491 289 ntBASIC2.34□□□□□ -2.03
RFX4Q33E94 AC079089.3-201ENST00000603094 673 ntBASIC2.34□□□□□ -2.03
RFX4Q33E94 AL035413.2-201ENST00000604801 525 ntBASIC2.34□□□□□ -2.03
RFX4Q33E94 AC103710.4-201ENST00000609301 899 ntBASIC2.34□□□□□ -2.03
RFX4Q33E94 DLEU1_2.1-201ENST00000617920 342 ntBASIC2.34□□□□□ -2.03
RFX4Q33E94 AC019226.1-201ENST00000625666 515 ntBASIC2.34□□□□□ -2.03
RFX4Q33E94 PCMTD1P7-201ENST00000634506 357 ntBASIC2.34□□□□□ -2.03
RFX4Q33E94 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC2.34□□□□□ -2.04
RFX4Q33E94 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC2.34□□□□□ -2.04
RFX4Q33E94 MTND4P16-201ENST00000466108 1367 ntBASIC2.34□□□□□ -2.04
RFX4Q33E94 AL138713.1-201ENST00000624026 2130 ntBASIC2.33□□□□□ -2.04
RFX4Q33E94 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC2.33□□□□□ -2.04
RFX4Q33E94 Y_RNA.302-201ENST00000364997 102 ntBASIC2.33□□□□□ -2.04
RFX4Q33E94 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC2.33□□□□□ -2.04
RFX4Q33E94 RNU6-198P-201ENST00000384258 104 ntBASIC2.33□□□□□ -2.04
RFX4Q33E94 SNORA80E-201ENST00000384744 137 ntBASIC2.33□□□□□ -2.04
RFX4Q33E94 MIR128-1-201ENST00000384921 82 ntBASIC2.33□□□□□ -2.04
RFX4Q33E94 MIR483-201ENST00000385070 76 ntBASIC2.33□□□□□ -2.04
RFX4Q33E94 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2.33□□□□□ -2.04
RFX4Q33E94 RNU6-516P-201ENST00000411381 104 ntBASIC2.33□□□□□ -2.04
RFX4Q33E94 AF274854.1-201ENST00000413236 615 ntBASIC2.33□□□□□ -2.04
RFX4Q33E94 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC2.33□□□□□ -2.04
RFX4Q33E94 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC2.33□□□□□ -2.04
RFX4Q33E94 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.33□□□□□ -2.04
RFX4Q33E94 XKRYP1-201ENST00000423438 492 ntBASIC2.33□□□□□ -2.04
RFX4Q33E94 AC234781.2-201ENST00000426370 994 ntBASIC2.33□□□□□ -2.04
RFX4Q33E94 AL035407.1-201ENST00000429211 571 ntBASIC2.33□□□□□ -2.04
RFX4Q33E94 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC2.33□□□□□ -2.04
RFX4Q33E94 XKRYP2-201ENST00000432915 492 ntBASIC2.33□□□□□ -2.04
RFX4Q33E94 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC2.33□□□□□ -2.04
RFX4Q33E94 AC009237.8-201ENST00000445492 379 ntBASIC2.33□□□□□ -2.04
RFX4Q33E94 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC2.33□□□□□ -2.04
RFX4Q33E94 MTND1P9-201ENST00000453775 944 ntBASIC2.33□□□□□ -2.04
RFX4Q33E94 AC034222.1-201ENST00000494052 532 ntBASIC2.33□□□□□ -2.04
RFX4Q33E94 RPS27P26-201ENST00000494583 239 ntBASIC2.33□□□□□ -2.04
RFX4Q33E94 AC022447.3-201ENST00000506865 495 ntBASIC2.33□□□□□ -2.04
RFX4Q33E94 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC2.33□□□□□ -2.04
RFX4Q33E94 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC2.33□□□□□ -2.04
RFX4Q33E94 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC2.33□□□□□ -2.04
RFX4Q33E94 AC112673.1-201ENST00000513168 575 ntBASIC2.33□□□□□ -2.04
RFX4Q33E94 RNA5SP82-201ENST00000516707 92 ntBASIC2.33□□□□□ -2.04
RFX4Q33E94 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC2.33□□□□□ -2.04
RFX4Q33E94 CKS1BP7-201ENST00000522230 235 ntBASIC2.33□□□□□ -2.04
RFX4Q33E94 EEF1A1P37-201ENST00000522748 715 ntBASIC2.33□□□□□ -2.04
RFX4Q33E94 OR4R1P-201ENST00000529879 463 ntBASIC2.33□□□□□ -2.04
RFX4Q33E94 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC2.33□□□□□ -2.04
RFX4Q33E94 AC010546.1-201ENST00000569391 485 ntBASIC2.33□□□□□ -2.04
RFX4Q33E94 MIR5194-201ENST00000582634 120 ntBASIC2.33□□□□□ -2.04
RFX4Q33E94 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC2.33□□□□□ -2.04
RFX4Q33E94 AL161756.2-201ENST00000604597 246 ntBASIC2.33□□□□□ -2.04
RFX4Q33E94 AL139344.1-201ENST00000605228 195 ntBASIC2.33□□□□□ -2.04
RFX4Q33E94 AL136363.1-201ENST00000605349 337 ntBASIC2.33□□□□□ -2.04
RFX4Q33E94 AC011890.2-201ENST00000613393 294 ntBASIC2.33□□□□□ -2.04
RFX4Q33E94 TUG1_2.1-201ENST00000614234 87 ntBASIC2.33□□□□□ -2.04
RFX4Q33E94 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC2.33□□□□□ -2.04
RFX4Q33E94 AC009268.2-201ENST00000621925 457 ntBASIC2.33□□□□□ -2.04
RFX4Q33E94 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC2.33□□□□□ -2.04
RFX4Q33E94 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.33□□□□□ -2.04
RFX4Q33E94 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.33□□□□□ -2.04
RFX4Q33E94 SDAD1P2-201ENST00000441308 2028 ntBASIC2.32□□□□□ -2.04
RFX4Q33E94 GNG5P1-201ENST00000255500 204 ntBASIC2.32□□□□□ -2.04
RFX4Q33E94 RNA5SP456-201ENST00000364002 114 ntBASIC2.32□□□□□ -2.04
RFX4Q33E94 SNORA41-201ENST00000384675 132 ntBASIC2.32□□□□□ -2.04
RFX4Q33E94 TAS2R15P-201ENST00000390674 928 ntBASIC2.32□□□□□ -2.04
RFX4Q33E94 AL590084.2-201ENST00000401481 382 ntBASIC2.32□□□□□ -2.04
RFX4Q33E94 MIR1305-201ENST00000408300 86 ntBASIC2.32□□□□□ -2.04
RFX4Q33E94 U3.37-201ENST00000408528 213 ntBASIC2.32□□□□□ -2.04
RFX4Q33E94 MIR1290-201ENST00000408735 78 ntBASIC2.32□□□□□ -2.04
RFX4Q33E94 RNU6-193P-201ENST00000410977 107 ntBASIC2.32□□□□□ -2.04
RFX4Q33E94 MTND1P21-201ENST00000412991 285 ntBASIC2.32□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 169.5 ms