Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 MIR8081-201ENST00000611533 95 ntBASIC1.46□□□□□ -2.18
CHD3Q12873 MIR6779-201ENST00000617283 64 ntBASIC1.46□□□□□ -2.18
CHD3Q12873 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC1.46□□□□□ -2.18
CHD3Q12873 AC027309.3-201ENST00000623419 351 ntBASIC1.46□□□□□ -2.18
CHD3Q12873 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.46□□□□□ -2.18
CHD3Q12873 AC116618.1-201ENST00000634617 774 ntBASIC1.46□□□□□ -2.18
CHD3Q12873 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.46□□□□□ -2.18
CHD3Q12873 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.46□□□□□ -2.18
CHD3Q12873 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
CHD3Q12873 RNU4-23P-201ENST00000362839 140 ntBASIC1.45□□□□□ -2.18
CHD3Q12873 SNORA7.1-201ENST00000363750 139 ntBASIC1.45□□□□□ -2.18
CHD3Q12873 TAF9BP2-201ENST00000400856 499 ntBASIC1.45□□□□□ -2.18
CHD3Q12873 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC1.45□□□□□ -2.18
CHD3Q12873 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC1.45□□□□□ -2.18
CHD3Q12873 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC1.45□□□□□ -2.18
CHD3Q12873 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC1.45□□□□□ -2.18
CHD3Q12873 RNU1-123P-201ENST00000458950 160 ntBASIC1.45□□□□□ -2.18
CHD3Q12873 AC080013.2-201ENST00000460866 323 ntBASIC1.45□□□□□ -2.18
CHD3Q12873 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC1.45□□□□□ -2.18
CHD3Q12873 SCARNA3-201ENST00000517097 143 ntBASIC1.45□□□□□ -2.18
CHD3Q12873 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC1.45□□□□□ -2.18
CHD3Q12873 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC1.45□□□□□ -2.18
CHD3Q12873 AC013468.1-201ENST00000608680 598 ntBASIC1.45□□□□□ -2.18
CHD3Q12873 AP000254.1-201ENST00000609934 520 ntBASIC1.45□□□□□ -2.18
CHD3Q12873 AC006213.4-201ENST00000616184 634 ntBASIC1.45□□□□□ -2.18
CHD3Q12873 AC018926.3-201ENST00000618841 406 ntBASIC1.45□□□□□ -2.18
CHD3Q12873 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC1.45□□□□□ -2.18
CHD3Q12873 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
CHD3Q12873 AC008568.2-201ENST00000623862 2313 ntBASIC1.45□□□□□ -2.18
CHD3Q12873 RNA5SP354-201ENST00000391247 136 ntBASIC1.45□□□□□ -2.18
CHD3Q12873 DSTNP4-201ENST00000399472 474 ntBASIC1.45□□□□□ -2.18
CHD3Q12873 ZNF736P10Y-201ENST00000403990 1110 ntBASIC1.45□□□□□ -2.18
CHD3Q12873 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC1.45□□□□□ -2.18
CHD3Q12873 HMGN2P19-201ENST00000425149 265 ntBASIC1.45□□□□□ -2.18
CHD3Q12873 GTF2IP7-202ENST00000436677 309 ntBASIC1.45□□□□□ -2.18
CHD3Q12873 AC079203.1-201ENST00000487972 404 ntBASIC1.45□□□□□ -2.18
CHD3Q12873 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
CHD3Q12873 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC1.45□□□□□ -2.18
CHD3Q12873 RNA5SP220-201ENST00000516298 104 ntBASIC1.45□□□□□ -2.18
CHD3Q12873 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC1.45□□□□□ -2.18
CHD3Q12873 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC1.45□□□□□ -2.18
CHD3Q12873 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC1.45□□□□□ -2.18
CHD3Q12873 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC1.45□□□□□ -2.18
CHD3Q12873 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC1.45□□□□□ -2.18
CHD3Q12873 AC091932.3-201ENST00000624223 323 ntBASIC1.45□□□□□ -2.18
CHD3Q12873 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.45□□□□□ -2.18
CHD3Q12873 AC233981.2-201ENST00000611524 1614 ntBASIC1.44□□□□□ -2.18
CHD3Q12873 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
CHD3Q12873 RNU4-13P-201ENST00000364019 141 ntBASIC1.44□□□□□ -2.18
CHD3Q12873 RNU6-198P-201ENST00000384258 104 ntBASIC1.44□□□□□ -2.18
CHD3Q12873 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
CHD3Q12873 SNORD56-201ENST00000413522 71 ntBASIC1.44□□□□□ -2.18
CHD3Q12873 MTND4P24-201ENST00000424002 397 ntBASIC1.44□□□□□ -2.18
CHD3Q12873 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC1.44□□□□□ -2.18
CHD3Q12873 AC104073.1-201ENST00000451988 151 ntBASIC1.44□□□□□ -2.18
CHD3Q12873 RN7SL274P-201ENST00000492268 272 ntBASIC1.44□□□□□ -2.18
CHD3Q12873 RNU2-19P-201ENST00000517288 84 ntBASIC1.44□□□□□ -2.18
CHD3Q12873 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC1.44□□□□□ -2.18
CHD3Q12873 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC1.44□□□□□ -2.18
CHD3Q12873 MIR3618-201ENST00000580330 88 ntBASIC1.44□□□□□ -2.18
CHD3Q12873 AC105224.1-201ENST00000587055 421 ntBASIC1.44□□□□□ -2.18
CHD3Q12873 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC1.44□□□□□ -2.18
CHD3Q12873 AP006248.3-201ENST00000623580 594 ntBASIC1.44□□□□□ -2.18
CHD3Q12873 AC017104.5-201ENST00000637647 639 ntBASIC1.44□□□□□ -2.18
CHD3Q12873 SNORD114-26-201ENST00000363543 72 ntBASIC1.44□□□□□ -2.18
CHD3Q12873 RNA5SP27-201ENST00000363839 119 ntBASIC1.44□□□□□ -2.18
CHD3Q12873 RNU6-891P-201ENST00000384280 111 ntBASIC1.44□□□□□ -2.18
CHD3Q12873 MCTS2P-201ENST00000394552 546 ntBASIC1.44□□□□□ -2.18
CHD3Q12873 AL356867.1-201ENST00000429623 299 ntBASIC1.44□□□□□ -2.18
CHD3Q12873 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC1.44□□□□□ -2.18
CHD3Q12873 MTCYBP17-201ENST00000503579 789 ntBASIC1.44□□□□□ -2.18
CHD3Q12873 RNU4ATAC10P-201ENST00000516967 122 ntBASIC1.44□□□□□ -2.18
CHD3Q12873 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.44□□□□□ -2.18
CHD3Q12873 CASP1P1-201ENST00000526345 212 ntBASIC1.44□□□□□ -2.18
CHD3Q12873 MIR4504-201ENST00000577413 92 ntBASIC1.44□□□□□ -2.18
CHD3Q12873 AL109918.3-201ENST00000603072 338 ntBASIC1.44□□□□□ -2.18
CHD3Q12873 AC106900.2-201ENST00000604994 317 ntBASIC1.44□□□□□ -2.18
CHD3Q12873 AC016542.1-201ENST00000608259 493 ntBASIC1.44□□□□□ -2.18
CHD3Q12873 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC1.44□□□□□ -2.18
CHD3Q12873 BX649567.1-201ENST00000642071 1134 ntBASIC1.44□□□□□ -2.18
CHD3Q12873 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.44□□□□□ -2.18
CHD3Q12873 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.43□□□□□ -2.18
CHD3Q12873 ENSAP3-201ENST00000312710 333 ntBASIC1.43□□□□□ -2.18
CHD3Q12873 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC1.43□□□□□ -2.18
CHD3Q12873 SNORA51.6-201ENST00000384151 125 ntBASIC1.43□□□□□ -2.18
CHD3Q12873 CISD1P1-201ENST00000393907 327 ntBASIC1.43□□□□□ -2.18
CHD3Q12873 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC1.43□□□□□ -2.18
CHD3Q12873 BEND7P1-201ENST00000422058 457 ntBASIC1.43□□□□□ -2.18
CHD3Q12873 AL451074.3-201ENST00000437709 472 ntBASIC1.43□□□□□ -2.18
CHD3Q12873 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC1.43□□□□□ -2.18
CHD3Q12873 PIGFP3-201ENST00000441918 722 ntBASIC1.43□□□□□ -2.18
CHD3Q12873 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC1.43□□□□□ -2.18
CHD3Q12873 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC1.43□□□□□ -2.18
CHD3Q12873 EIF4EP3-201ENST00000498782 656 ntBASIC1.43□□□□□ -2.18
CHD3Q12873 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC1.43□□□□□ -2.18
CHD3Q12873 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
CHD3Q12873 AL359273.1-201ENST00000510918 627 ntBASIC1.43□□□□□ -2.18
CHD3Q12873 AF131216.2-201ENST00000512316 564 ntBASIC1.43□□□□□ -2.18
CHD3Q12873 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC1.43□□□□□ -2.18
CHD3Q12873 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC1.43□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 130.4 ms