Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC1.91□□□□□ -2.1
FOXA1P55317 AC087359.1-201ENST00000508335 1740 ntBASIC1.91□□□□□ -2.1
FOXA1P55317 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC1.91□□□□□ -2.1
FOXA1P55317 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.91□□□□□ -2.1
FOXA1P55317 ZNF658B-202ENST00000615961 3375 ntBASIC1.9□□□□□ -2.1
FOXA1P55317 AC005539.1-201ENST00000443768 1479 ntBASIC1.9□□□□□ -2.11
FOXA1P55317 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
FOXA1P55317 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
FOXA1P55317 U8.2-201ENST00000363156 134 ntBASIC1.9□□□□□ -2.11
FOXA1P55317 RNU6-343P-201ENST00000364709 104 ntBASIC1.9□□□□□ -2.11
FOXA1P55317 SNORD116-12-201ENST00000384468 92 ntBASIC1.9□□□□□ -2.11
FOXA1P55317 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
FOXA1P55317 TPMTP2-201ENST00000414372 726 ntBASIC1.9□□□□□ -2.11
FOXA1P55317 CCDC58P2-201ENST00000417131 366 ntBASIC1.9□□□□□ -2.11
FOXA1P55317 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC1.9□□□□□ -2.11
FOXA1P55317 Z98742.3-201ENST00000418637 326 ntBASIC1.9□□□□□ -2.11
FOXA1P55317 RPL7L1P10-201ENST00000427790 463 ntBASIC1.9□□□□□ -2.11
FOXA1P55317 MTND4P6-201ENST00000438297 472 ntBASIC1.9□□□□□ -2.11
FOXA1P55317 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC1.9□□□□□ -2.11
FOXA1P55317 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC1.9□□□□□ -2.11
FOXA1P55317 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC1.9□□□□□ -2.11
FOXA1P55317 AC010099.1-201ENST00000455434 375 ntBASIC1.9□□□□□ -2.11
FOXA1P55317 RNU7-136P-201ENST00000458819 69 ntBASIC1.9□□□□□ -2.11
FOXA1P55317 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC1.9□□□□□ -2.11
FOXA1P55317 AC147055.4-201ENST00000504399 745 ntBASIC1.9□□□□□ -2.11
FOXA1P55317 AC096571.1-202ENST00000506634 735 ntBASIC1.9□□□□□ -2.11
FOXA1P55317 AC112206.4-201ENST00000515142 405 ntBASIC1.9□□□□□ -2.11
FOXA1P55317 RNU6-528P-201ENST00000516926 100 ntBASIC1.9□□□□□ -2.11
FOXA1P55317 SNORA31.22-201ENST00000517204 135 ntBASIC1.9□□□□□ -2.11
FOXA1P55317 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC1.9□□□□□ -2.11
FOXA1P55317 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC1.9□□□□□ -2.11
FOXA1P55317 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC1.9□□□□□ -2.11
FOXA1P55317 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC1.9□□□□□ -2.11
FOXA1P55317 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC1.9□□□□□ -2.11
FOXA1P55317 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC1.9□□□□□ -2.11
FOXA1P55317 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC1.9□□□□□ -2.11
FOXA1P55317 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC1.9□□□□□ -2.11
FOXA1P55317 AP001429.1-201ENST00000602568 530 ntBASIC1.9□□□□□ -2.11
FOXA1P55317 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC1.9□□□□□ -2.11
FOXA1P55317 AC018645.2-201ENST00000609151 472 ntBASIC1.9□□□□□ -2.11
FOXA1P55317 AL138478.1-201ENST00000612252 832 ntBASIC1.9□□□□□ -2.11
FOXA1P55317 PART1_2.1-201ENST00000612397 250 ntBASIC1.9□□□□□ -2.11
FOXA1P55317 AL161629.2-201ENST00000615347 275 ntBASIC1.9□□□□□ -2.11
FOXA1P55317 AL121895.2-201ENST00000619558 447 ntBASIC1.9□□□□□ -2.11
FOXA1P55317 AC004808.1-201ENST00000627671 721 ntBASIC1.9□□□□□ -2.11
FOXA1P55317 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC1.9□□□□□ -2.11
FOXA1P55317 TPTE2P4-201ENST00000258589 1605 ntBASIC1.9□□□□□ -2.11
FOXA1P55317 AL022578.1-201ENST00000439330 1433 ntBASIC1.9□□□□□ -2.11
FOXA1P55317 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.9□□□□□ -2.11
FOXA1P55317 RNU5A-1-201ENST00000362698 116 ntBASIC1.89□□□□□ -2.11
FOXA1P55317 SNORA6-201ENST00000384033 151 ntBASIC1.89□□□□□ -2.11
FOXA1P55317 RNU6-76P-201ENST00000384060 104 ntBASIC1.89□□□□□ -2.11
FOXA1P55317 AL355143.1-201ENST00000407101 841 ntBASIC1.89□□□□□ -2.11
FOXA1P55317 RNU2-20P-201ENST00000410425 191 ntBASIC1.89□□□□□ -2.11
FOXA1P55317 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC1.89□□□□□ -2.11
FOXA1P55317 AC234781.2-201ENST00000426370 994 ntBASIC1.89□□□□□ -2.11
FOXA1P55317 AL590383.1-201ENST00000428602 75 ntBASIC1.89□□□□□ -2.11
FOXA1P55317 AL356320.1-201ENST00000429616 163 ntBASIC1.89□□□□□ -2.11
FOXA1P55317 AL445646.1-201ENST00000431784 216 ntBASIC1.89□□□□□ -2.11
FOXA1P55317 AC090774.1-201ENST00000435925 246 ntBASIC1.89□□□□□ -2.11
FOXA1P55317 UBE2D3P1-201ENST00000436669 444 ntBASIC1.89□□□□□ -2.11
FOXA1P55317 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC1.89□□□□□ -2.11
FOXA1P55317 PGBD4P3-201ENST00000440731 581 ntBASIC1.89□□□□□ -2.11
FOXA1P55317 ARPC3P5-201ENST00000448802 534 ntBASIC1.89□□□□□ -2.11
FOXA1P55317 BX322784.1-201ENST00000455793 1077 ntBASIC1.89□□□□□ -2.11
FOXA1P55317 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
FOXA1P55317 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC1.89□□□□□ -2.11
FOXA1P55317 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC1.89□□□□□ -2.11
FOXA1P55317 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC1.89□□□□□ -2.11
FOXA1P55317 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC1.89□□□□□ -2.11
FOXA1P55317 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC1.89□□□□□ -2.11
FOXA1P55317 RNA5SP364-201ENST00000516938 78 ntBASIC1.89□□□□□ -2.11
FOXA1P55317 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC1.89□□□□□ -2.11
FOXA1P55317 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC1.89□□□□□ -2.11
FOXA1P55317 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC1.89□□□□□ -2.11
FOXA1P55317 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC1.89□□□□□ -2.11
FOXA1P55317 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.89□□□□□ -2.11
FOXA1P55317 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC1.89□□□□□ -2.11
FOXA1P55317 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC1.89□□□□□ -2.11
FOXA1P55317 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC1.89□□□□□ -2.11
FOXA1P55317 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC1.89□□□□□ -2.11
FOXA1P55317 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC1.89□□□□□ -2.11
FOXA1P55317 AC090132.2-201ENST00000615881 347 ntBASIC1.89□□□□□ -2.11
FOXA1P55317 LINC02211-204ENST00000642024 1070 ntBASIC1.89□□□□□ -2.11
FOXA1P55317 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
FOXA1P55317 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.89□□□□□ -2.11
FOXA1P55317 SLC10A5P1-201ENST00000379063 1306 ntBASIC1.89□□□□□ -2.11
FOXA1P55317 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC1.89□□□□□ -2.11
FOXA1P55317 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC1.88□□□□□ -2.11
FOXA1P55317 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
FOXA1P55317 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC1.88□□□□□ -2.11
FOXA1P55317 MTCO1P9-201ENST00000505577 1534 ntBASIC1.88□□□□□ -2.11
FOXA1P55317 Y_RNA.234-201ENST00000364409 97 ntBASIC1.88□□□□□ -2.11
FOXA1P55317 RNU4-52P-201ENST00000384209 138 ntBASIC1.88□□□□□ -2.11
FOXA1P55317 RNU6-952P-201ENST00000391164 108 ntBASIC1.88□□□□□ -2.11
FOXA1P55317 CASP3-203ENST00000393588 677 ntTSL 4 BASIC1.88□□□□□ -2.11
FOXA1P55317 SUMO2P12-201ENST00000405924 140 ntBASIC1.88□□□□□ -2.11
FOXA1P55317 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC1.88□□□□□ -2.11
FOXA1P55317 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC1.88□□□□□ -2.11
FOXA1P55317 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.88□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms