Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AL049874.1-201ENST00000489560 388 ntBASIC4.82□□□□□ -1.64
LIG3P49916 AC015911.1-201ENST00000495111 156 ntBASIC4.82□□□□□ -1.64
LIG3P49916 CEACAMP10-202ENST00000495431 496 ntBASIC4.82□□□□□ -1.64
LIG3P49916 SCARNA16.2-201ENST00000516520 172 ntBASIC4.82□□□□□ -1.64
LIG3P49916 AC133555.2-201ENST00000550213 292 ntBASIC4.82□□□□□ -1.64
LIG3P49916 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC4.82□□□□□ -1.64
LIG3P49916 LRRC37A5P-203ENST00000580181 585 ntBASIC4.82□□□□□ -1.64
LIG3P49916 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC4.82□□□□□ -1.64
LIG3P49916 ELOCP5-201ENST00000604924 333 ntBASIC4.82□□□□□ -1.64
LIG3P49916 AC020634.1-201ENST00000608701 549 ntBASIC4.82□□□□□ -1.64
LIG3P49916 AC005344.1-201ENST00000613391 459 ntBASIC4.82□□□□□ -1.64
LIG3P49916 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC4.82□□□□□ -1.64
LIG3P49916 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.82□□□□□ -1.64
LIG3P49916 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
LIG3P49916 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
LIG3P49916 AC005183.1-201ENST00000603687 1979 ntBASIC4.82□□□□□ -1.64
LIG3P49916 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC4.82□□□□□ -1.64
LIG3P49916 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
LIG3P49916 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
LIG3P49916 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
LIG3P49916 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.81□□□□□ -1.64
LIG3P49916 SNORD74.4-201ENST00000364129 80 ntBASIC4.81□□□□□ -1.64
LIG3P49916 RNU6-1329P-201ENST00000365664 107 ntBASIC4.81□□□□□ -1.64
LIG3P49916 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
LIG3P49916 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
LIG3P49916 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC4.81□□□□□ -1.64
LIG3P49916 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC4.81□□□□□ -1.64
LIG3P49916 AL592045.1-201ENST00000429867 352 ntBASIC4.81□□□□□ -1.64
LIG3P49916 MTCYBP9-201ENST00000431021 303 ntBASIC4.81□□□□□ -1.64
LIG3P49916 HSPD1P21-201ENST00000436541 245 ntBASIC4.81□□□□□ -1.64
LIG3P49916 AC005154.2-201ENST00000438110 379 ntBASIC4.81□□□□□ -1.64
LIG3P49916 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC4.81□□□□□ -1.64
LIG3P49916 RPS29P22-201ENST00000472363 168 ntBASIC4.81□□□□□ -1.64
LIG3P49916 AC092451.1-201ENST00000480211 153 ntBASIC4.81□□□□□ -1.64
LIG3P49916 AC022493.2-201ENST00000506122 481 ntBASIC4.81□□□□□ -1.64
LIG3P49916 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC4.81□□□□□ -1.64
LIG3P49916 AC008716.1-201ENST00000511084 513 ntBASIC4.81□□□□□ -1.64
LIG3P49916 RNU6-699P-201ENST00000517081 110 ntBASIC4.81□□□□□ -1.64
LIG3P49916 SNORA31.20-201ENST00000517111 133 ntBASIC4.81□□□□□ -1.64
LIG3P49916 RNU6-709P-201ENST00000517257 104 ntBASIC4.81□□□□□ -1.64
LIG3P49916 AF186190.1-201ENST00000517470 480 ntBASIC4.81□□□□□ -1.64
LIG3P49916 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC4.81□□□□□ -1.64
LIG3P49916 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC4.81□□□□□ -1.64
LIG3P49916 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.81□□□□□ -1.64
LIG3P49916 AC091516.1-201ENST00000549191 703 ntBASIC4.81□□□□□ -1.64
LIG3P49916 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC4.81□□□□□ -1.64
LIG3P49916 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC4.81□□□□□ -1.64
LIG3P49916 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC4.81□□□□□ -1.64
LIG3P49916 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
LIG3P49916 HMGB2P1-201ENST00000591146 634 ntBASIC4.81□□□□□ -1.64
LIG3P49916 Z99571.1-201ENST00000636677 394 ntBASIC4.81□□□□□ -1.64
LIG3P49916 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
LIG3P49916 AC025031.4-201ENST00000621248 3271 ntBASIC4.81□□□□□ -1.64
LIG3P49916 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
LIG3P49916 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC4.8□□□□□ -1.64
LIG3P49916 Z73965.1-201ENST00000623412 2297 ntBASIC4.8□□□□□ -1.64
LIG3P49916 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
LIG3P49916 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
LIG3P49916 AL445487.1-201ENST00000415694 1580 ntBASIC4.8□□□□□ -1.64
LIG3P49916 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC4.8□□□□□ -1.64
LIG3P49916 Y_RNA.80-201ENST00000362996 102 ntBASIC4.8□□□□□ -1.64
LIG3P49916 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
LIG3P49916 RNU6-629P-201ENST00000384061 103 ntBASIC4.8□□□□□ -1.64
LIG3P49916 Y_RNA.428-201ENST00000384078 102 ntBASIC4.8□□□□□ -1.64
LIG3P49916 MIR514A1-201ENST00000385133 98 ntBASIC4.8□□□□□ -1.64
LIG3P49916 MIR301A-201ENST00000385261 86 ntBASIC4.8□□□□□ -1.64
LIG3P49916 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC4.8□□□□□ -1.64
LIG3P49916 MIR548F4-201ENST00000408515 105 ntBASIC4.8□□□□□ -1.64
LIG3P49916 RNU6-607P-201ENST00000411283 108 ntBASIC4.8□□□□□ -1.64
LIG3P49916 BX510359.2-201ENST00000417920 305 ntBASIC4.8□□□□□ -1.64
LIG3P49916 RPS15AP6-201ENST00000420703 385 ntBASIC4.8□□□□□ -1.64
LIG3P49916 AC008267.5-201ENST00000424928 265 ntBASIC4.8□□□□□ -1.64
LIG3P49916 RSL24D1P6-201ENST00000426934 401 ntBASIC4.8□□□□□ -1.64
LIG3P49916 RPL23AP50-201ENST00000434149 455 ntBASIC4.8□□□□□ -1.64
LIG3P49916 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC4.8□□□□□ -1.64
LIG3P49916 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC4.8□□□□□ -1.64
LIG3P49916 AL451050.1-201ENST00000450126 415 ntBASIC4.8□□□□□ -1.64
LIG3P49916 GSTA11P-201ENST00000452866 669 ntBASIC4.8□□□□□ -1.64
LIG3P49916 RNU7-187P-201ENST00000458985 68 ntBASIC4.8□□□□□ -1.64
LIG3P49916 CREM-230ENST00000474931 626 ntTSL 2 BASIC4.8□□□□□ -1.64
LIG3P49916 HMGB1P30-201ENST00000492455 606 ntBASIC4.8□□□□□ -1.64
LIG3P49916 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC4.8□□□□□ -1.64
LIG3P49916 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC4.8□□□□□ -1.64
LIG3P49916 SCARNA22-201ENST00000503991 125 ntBASIC4.8□□□□□ -1.64
LIG3P49916 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC4.8□□□□□ -1.64
LIG3P49916 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC4.8□□□□□ -1.64
LIG3P49916 MTCO2P24-201ENST00000515611 426 ntBASIC4.8□□□□□ -1.64
LIG3P49916 RNU6-264P-201ENST00000517134 104 ntBASIC4.8□□□□□ -1.64
LIG3P49916 SNORD116.3-201ENST00000517176 78 ntBASIC4.8□□□□□ -1.64
LIG3P49916 RNU6-1315P-201ENST00000517187 99 ntBASIC4.8□□□□□ -1.64
LIG3P49916 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.8□□□□□ -1.64
LIG3P49916 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC4.8□□□□□ -1.64
LIG3P49916 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC4.8□□□□□ -1.64
LIG3P49916 AC006006.1-201ENST00000603082 144 ntBASIC4.8□□□□□ -1.64
LIG3P49916 MIR6820-201ENST00000611508 62 ntBASIC4.8□□□□□ -1.64
LIG3P49916 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
LIG3P49916 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.8□□□□□ -1.64
LIG3P49916 MIR6853-201ENST00000619642 74 ntBASIC4.8□□□□□ -1.64
LIG3P49916 AL162373.1-201ENST00000620433 407 ntBASIC4.8□□□□□ -1.64
LIG3P49916 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms