Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 RPS15AP12-201ENST00000419498 388 ntBASIC2.33□□□□□ -2.04
BRCA1P38398 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC2.33□□□□□ -2.04
BRCA1P38398 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC2.33□□□□□ -2.04
BRCA1P38398 MTCO2P1-201ENST00000424648 477 ntBASIC2.33□□□□□ -2.04
BRCA1P38398 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.33□□□□□ -2.04
BRCA1P38398 MTCO1P3-201ENST00000429327 192 ntBASIC2.33□□□□□ -2.04
BRCA1P38398 AC092473.1-201ENST00000441098 221 ntBASIC2.33□□□□□ -2.04
BRCA1P38398 RPS29P12-201ENST00000460178 152 ntBASIC2.33□□□□□ -2.04
BRCA1P38398 AP000852.1-201ENST00000472460 573 ntBASIC2.33□□□□□ -2.04
BRCA1P38398 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
BRCA1P38398 RNU6-1028P-201ENST00000517164 93 ntBASIC2.33□□□□□ -2.04
BRCA1P38398 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.33□□□□□ -2.04
BRCA1P38398 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC2.33□□□□□ -2.04
BRCA1P38398 AC125611.2-201ENST00000551907 647 ntBASIC2.33□□□□□ -2.04
BRCA1P38398 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC2.33□□□□□ -2.04
BRCA1P38398 AC122134.1-202ENST00000569111 1201 ntBASIC2.33□□□□□ -2.04
BRCA1P38398 LARP7P2-201ENST00000575306 125 ntBASIC2.33□□□□□ -2.04
BRCA1P38398 AC069304.2-201ENST00000605154 435 ntBASIC2.33□□□□□ -2.04
BRCA1P38398 AL353748.2-201ENST00000622148 471 ntBASIC2.33□□□□□ -2.04
BRCA1P38398 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.33□□□□□ -2.04
BRCA1P38398 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
BRCA1P38398 TPTE2P4-201ENST00000258589 1605 ntBASIC2.33□□□□□ -2.04
BRCA1P38398 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
BRCA1P38398 RNU1-105P-201ENST00000363470 161 ntBASIC2.33□□□□□ -2.04
BRCA1P38398 RNU6-707P-201ENST00000364647 95 ntBASIC2.33□□□□□ -2.04
BRCA1P38398 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC2.33□□□□□ -2.04
BRCA1P38398 RNU2-43P-201ENST00000410306 190 ntBASIC2.33□□□□□ -2.04
BRCA1P38398 MTND1P21-201ENST00000412991 285 ntBASIC2.33□□□□□ -2.04
BRCA1P38398 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC2.33□□□□□ -2.04
BRCA1P38398 AC234775.1-201ENST00000454247 670 ntBASIC2.33□□□□□ -2.04
BRCA1P38398 CBX3P3-201ENST00000508108 532 ntBASIC2.33□□□□□ -2.04
BRCA1P38398 MTCYBP16-201ENST00000509187 1129 ntBASIC2.33□□□□□ -2.04
BRCA1P38398 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC2.33□□□□□ -2.04
BRCA1P38398 AP000889.2-201ENST00000532684 490 ntBASIC2.33□□□□□ -2.04
BRCA1P38398 AC087897.1-201ENST00000550134 156 ntBASIC2.33□□□□□ -2.04
BRCA1P38398 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC2.33□□□□□ -2.04
BRCA1P38398 MIR5708-201ENST00000579723 85 ntBASIC2.33□□□□□ -2.04
BRCA1P38398 AP005136.1-201ENST00000579765 429 ntBASIC2.33□□□□□ -2.04
BRCA1P38398 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC2.33□□□□□ -2.04
BRCA1P38398 HSPE1P7-201ENST00000604681 321 ntBASIC2.33□□□□□ -2.04
BRCA1P38398 OR5H6-203ENST00000642105 978 ntBASIC2.33□□□□□ -2.04
BRCA1P38398 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
BRCA1P38398 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
BRCA1P38398 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
BRCA1P38398 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
BRCA1P38398 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
BRCA1P38398 MTCO2P5-201ENST00000422621 426 ntBASIC2.32□□□□□ -2.04
BRCA1P38398 MTCYBP42-201ENST00000444653 1130 ntBASIC2.32□□□□□ -2.04
BRCA1P38398 AC027673.1-201ENST00000456245 405 ntBASIC2.32□□□□□ -2.04
BRCA1P38398 SNORD121B-201ENST00000458838 81 ntBASIC2.32□□□□□ -2.04
BRCA1P38398 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC2.32□□□□□ -2.04
BRCA1P38398 SNORA25.15-201ENST00000516487 89 ntBASIC2.32□□□□□ -2.04
BRCA1P38398 NDUFS5P6-201ENST00000529136 295 ntBASIC2.32□□□□□ -2.04
BRCA1P38398 AC087894.1-201ENST00000538359 518 ntBASIC2.32□□□□□ -2.04
BRCA1P38398 MTATP6P2-201ENST00000603319 678 ntBASIC2.32□□□□□ -2.04
BRCA1P38398 DUXAP10-204ENST00000612052 616 ntBASIC2.32□□□□□ -2.04
BRCA1P38398 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.32□□□□□ -2.04
BRCA1P38398 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC2.32□□□□□ -2.04
BRCA1P38398 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.31□□□□□ -2.04
BRCA1P38398 MIR1294-201ENST00000408503 142 ntBASIC2.31□□□□□ -2.04
BRCA1P38398 BTF3P8-201ENST00000414577 526 ntBASIC2.31□□□□□ -2.04
BRCA1P38398 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC2.31□□□□□ -2.04
BRCA1P38398 AC007742.1-201ENST00000425789 329 ntBASIC2.31□□□□□ -2.04
BRCA1P38398 FO393414.1-201ENST00000428697 1184 ntBASIC2.31□□□□□ -2.04
BRCA1P38398 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC2.31□□□□□ -2.04
BRCA1P38398 ELOCP26-201ENST00000436067 329 ntBASIC2.31□□□□□ -2.04
BRCA1P38398 SDR42E1P3-201ENST00000438345 502 ntBASIC2.31□□□□□ -2.04
BRCA1P38398 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC2.31□□□□□ -2.04
BRCA1P38398 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC2.31□□□□□ -2.04
BRCA1P38398 AC010099.1-201ENST00000455434 375 ntBASIC2.31□□□□□ -2.04
BRCA1P38398 AC026410.2-201ENST00000460281 156 ntBASIC2.31□□□□□ -2.04
BRCA1P38398 AC009901.1-201ENST00000506703 541 ntBASIC2.31□□□□□ -2.04
BRCA1P38398 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC2.31□□□□□ -2.04
BRCA1P38398 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC2.31□□□□□ -2.04
BRCA1P38398 MTCO1P47-201ENST00000523889 1271 ntBASIC2.31□□□□□ -2.04
BRCA1P38398 AP001189.2-201ENST00000527320 189 ntBASIC2.31□□□□□ -2.04
BRCA1P38398 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC2.31□□□□□ -2.04
BRCA1P38398 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC2.31□□□□□ -2.04
BRCA1P38398 HIGD1AP17-201ENST00000554576 276 ntBASIC2.31□□□□□ -2.04
BRCA1P38398 AC245036.5-201ENST00000596330 847 ntBASIC2.31□□□□□ -2.04
BRCA1P38398 AC012360.2-201ENST00000609349 391 ntBASIC2.31□□□□□ -2.04
BRCA1P38398 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC2.31□□□□□ -2.04
BRCA1P38398 AC099654.7-201ENST00000635788 2127 ntBASIC2.31□□□□□ -2.04
BRCA1P38398 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
BRCA1P38398 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC2.31□□□□□ -2.04
BRCA1P38398 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.31□□□□□ -2.04
BRCA1P38398 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.31□□□□□ -2.04
BRCA1P38398 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.31□□□□□ -2.04
BRCA1P38398 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.31□□□□□ -2.04
BRCA1P38398 RNU6-657P-201ENST00000383904 107 ntBASIC2.31□□□□□ -2.04
BRCA1P38398 RNU6-575P-201ENST00000411326 105 ntBASIC2.31□□□□□ -2.04
BRCA1P38398 TPMTP2-201ENST00000414372 726 ntBASIC2.31□□□□□ -2.04
BRCA1P38398 MTND4P3-201ENST00000417829 541 ntBASIC2.31□□□□□ -2.04
BRCA1P38398 MTCO3P30-201ENST00000426425 670 ntBASIC2.31□□□□□ -2.04
BRCA1P38398 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC2.31□□□□□ -2.04
BRCA1P38398 USP9YP22-201ENST00000438971 294 ntBASIC2.31□□□□□ -2.04
BRCA1P38398 MTCYBP11-201ENST00000447254 1109 ntBASIC2.31□□□□□ -2.04
BRCA1P38398 SNRPFP4-201ENST00000456366 242 ntBASIC2.31□□□□□ -2.04
BRCA1P38398 MTAPP1-201ENST00000489154 819 ntBASIC2.31□□□□□ -2.04
BRCA1P38398 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC2.31□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms