Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
COL5A1P20908 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC1.96□□□□□ -2.1
COL5A1P20908 AC104986.1-201ENST00000517978 436 ntBASIC1.96□□□□□ -2.1
COL5A1P20908 AC105185.1-201ENST00000518705 535 ntBASIC1.96□□□□□ -2.1
COL5A1P20908 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC1.96□□□□□ -2.1
COL5A1P20908 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC1.96□□□□□ -2.1
COL5A1P20908 MTND2P26-201ENST00000528255 1029 ntBASIC1.96□□□□□ -2.1
COL5A1P20908 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC1.96□□□□□ -2.1
COL5A1P20908 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC1.96□□□□□ -2.1
COL5A1P20908 AC015688.2-201ENST00000584523 262 ntBASIC1.96□□□□□ -2.1
COL5A1P20908 AC010620.1-201ENST00000601088 1102 ntBASIC1.96□□□□□ -2.1
COL5A1P20908 AC090425.2-201ENST00000608818 501 ntBASIC1.96□□□□□ -2.1
COL5A1P20908 AC072039.2-201ENST00000608883 439 ntBASIC1.96□□□□□ -2.1
COL5A1P20908 AL360219.1-201ENST00000610230 366 ntBASIC1.96□□□□□ -2.1
COL5A1P20908 AC013562.2-201ENST00000611632 603 ntBASIC1.96□□□□□ -2.1
COL5A1P20908 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC1.96□□□□□ -2.1
COL5A1P20908 AC116563.2-201ENST00000624751 535 ntBASIC1.96□□□□□ -2.1
COL5A1P20908 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
COL5A1P20908 AL157700.1-201ENST00000561973 1432 ntBASIC1.96□□□□□ -2.1
COL5A1P20908 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
COL5A1P20908 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
COL5A1P20908 DBF4P1-201ENST00000412976 1892 ntBASIC1.96□□□□□ -2.1
COL5A1P20908 AP000776.1-201ENST00000530032 1663 ntBASIC1.96□□□□□ -2.1
COL5A1P20908 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC1.96□□□□□ -2.1
COL5A1P20908 VTRNA1-1-201ENST00000363120 99 ntBASIC1.96□□□□□ -2.1
COL5A1P20908 Y_RNA.224-201ENST00000364308 111 ntBASIC1.96□□□□□ -2.1
COL5A1P20908 ERHP2-201ENST00000402323 299 ntBASIC1.96□□□□□ -2.1
COL5A1P20908 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC1.96□□□□□ -2.1
COL5A1P20908 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC1.96□□□□□ -2.1
COL5A1P20908 MTND1P20-201ENST00000430341 950 ntBASIC1.96□□□□□ -2.1
COL5A1P20908 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC1.96□□□□□ -2.1
COL5A1P20908 VN1R108P-201ENST00000431580 830 ntBASIC1.96□□□□□ -2.1
COL5A1P20908 AC005345.1-201ENST00000431868 217 ntBASIC1.96□□□□□ -2.1
COL5A1P20908 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC1.96□□□□□ -2.1
COL5A1P20908 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC1.96□□□□□ -2.1
COL5A1P20908 HMGN2P21-201ENST00000447764 270 ntBASIC1.96□□□□□ -2.1
COL5A1P20908 RPL21P103-201ENST00000479921 488 ntBASIC1.96□□□□□ -2.1
COL5A1P20908 AC104435.1-201ENST00000483483 166 ntBASIC1.96□□□□□ -2.1
COL5A1P20908 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC1.96□□□□□ -2.1
COL5A1P20908 AC109445.1-201ENST00000512356 383 ntBASIC1.96□□□□□ -2.1
COL5A1P20908 LY96-202ENST00000518893 430 ntTSL 3 BASIC1.96□□□□□ -2.1
COL5A1P20908 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC1.96□□□□□ -2.1
COL5A1P20908 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
COL5A1P20908 MTCYBP33-201ENST00000575007 1130 ntBASIC1.96□□□□□ -2.1
COL5A1P20908 MIR4255-201ENST00000579351 72 ntBASIC1.96□□□□□ -2.1
COL5A1P20908 AP005136.1-201ENST00000579765 429 ntBASIC1.96□□□□□ -2.1
COL5A1P20908 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC1.96□□□□□ -2.1
COL5A1P20908 AC034102.8-201ENST00000615146 484 ntBASIC1.96□□□□□ -2.1
COL5A1P20908 AC091931.1-201ENST00000623488 728 ntBASIC1.96□□□□□ -2.1
COL5A1P20908 MKKS-204ENST00000639674 192 ntBASIC1.96□□□□□ -2.1
COL5A1P20908 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC1.95□□□□□ -2.1
COL5A1P20908 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
COL5A1P20908 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
COL5A1P20908 MTND5P31-201ENST00000419366 1374 ntBASIC1.95□□□□□ -2.1
COL5A1P20908 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC1.95□□□□□ -2.1
COL5A1P20908 RNU6-582P-201ENST00000362989 107 ntBASIC1.95□□□□□ -2.1
COL5A1P20908 Y_RNA.560-201ENST00000384689 102 ntBASIC1.95□□□□□ -2.1
COL5A1P20908 RNU6-920P-201ENST00000410926 92 ntBASIC1.95□□□□□ -2.1
COL5A1P20908 AC234782.4-201ENST00000417646 1048 ntBASIC1.95□□□□□ -2.1
COL5A1P20908 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC1.95□□□□□ -2.1
COL5A1P20908 AL031663.1-201ENST00000437445 219 ntBASIC1.95□□□□□ -2.1
COL5A1P20908 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC1.95□□□□□ -2.1
COL5A1P20908 TPTE2P6-202ENST00000445572 1007 ntBASIC1.95□□□□□ -2.1
COL5A1P20908 OR6K5P-201ENST00000447050 945 ntBASIC1.95□□□□□ -2.1
COL5A1P20908 RPL23AP20-201ENST00000447965 421 ntBASIC1.95□□□□□ -2.1
COL5A1P20908 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC1.95□□□□□ -2.1
COL5A1P20908 Z99714.1-201ENST00000450463 807 ntBASIC1.95□□□□□ -2.1
COL5A1P20908 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC1.95□□□□□ -2.1
COL5A1P20908 RPS27P23-201ENST00000487608 251 ntBASIC1.95□□□□□ -2.1
COL5A1P20908 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC1.95□□□□□ -2.1
COL5A1P20908 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC1.95□□□□□ -2.1
COL5A1P20908 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC1.95□□□□□ -2.1
COL5A1P20908 TRMT112P2-201ENST00000512910 132 ntBASIC1.95□□□□□ -2.1
COL5A1P20908 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC1.95□□□□□ -2.1
COL5A1P20908 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC1.95□□□□□ -2.1
COL5A1P20908 OR6C73P-201ENST00000546432 358 ntBASIC1.95□□□□□ -2.1
COL5A1P20908 AMZ2P1-203ENST00000565833 850 ntBASIC1.95□□□□□ -2.1
COL5A1P20908 AC138915.2-201ENST00000569776 97 ntBASIC1.95□□□□□ -2.1
COL5A1P20908 MIR3915-201ENST00000578518 97 ntBASIC1.95□□□□□ -2.1
COL5A1P20908 AC090616.2-202ENST00000584248 222 ntBASIC1.95□□□□□ -2.1
COL5A1P20908 MIR4999-201ENST00000585029 91 ntBASIC1.95□□□□□ -2.1
COL5A1P20908 AC020895.1-201ENST00000595362 272 ntBASIC1.95□□□□□ -2.1
COL5A1P20908 AC021171.1-201ENST00000603137 706 ntBASIC1.95□□□□□ -2.1
COL5A1P20908 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC1.95□□□□□ -2.1
COL5A1P20908 AC106791.2-201ENST00000604680 391 ntBASIC1.95□□□□□ -2.1
COL5A1P20908 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
COL5A1P20908 AC018926.3-201ENST00000618841 406 ntBASIC1.95□□□□□ -2.1
COL5A1P20908 AL031667.3-201ENST00000620124 655 ntBASIC1.95□□□□□ -2.1
COL5A1P20908 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC1.95□□□□□ -2.1
COL5A1P20908 RBM12B-AS1-201ENST00000623283 653 ntBASIC1.95□□□□□ -2.1
COL5A1P20908 AC007494.3-201ENST00000624660 743 ntBASIC1.95□□□□□ -2.1
COL5A1P20908 ZNF33CP-201ENST00000432492 2030 ntBASIC1.95□□□□□ -2.1
COL5A1P20908 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC1.95□□□□□ -2.1
COL5A1P20908 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC1.95□□□□□ -2.1
COL5A1P20908 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
COL5A1P20908 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
COL5A1P20908 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
COL5A1P20908 RNU6-661P-201ENST00000362409 107 ntBASIC1.94□□□□□ -2.1
COL5A1P20908 RNU6-216P-201ENST00000363282 104 ntBASIC1.94□□□□□ -2.1
COL5A1P20908 SNORD113-6-201ENST00000363345 75 ntBASIC1.94□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 113 ms