Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 MTND3P1-201ENST00000441336 220 ntBASIC2.46□□□□□ -2.02
CLDN9O95484 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC2.46□□□□□ -2.02
CLDN9O95484 MTCO3P45-201ENST00000443036 613 ntBASIC2.46□□□□□ -2.02
CLDN9O95484 USP9YP17-201ENST00000444617 696 ntBASIC2.46□□□□□ -2.02
CLDN9O95484 AC108938.1-201ENST00000451204 136 ntBASIC2.46□□□□□ -2.02
CLDN9O95484 SNORD109B-201ENST00000458961 67 ntBASIC2.46□□□□□ -2.02
CLDN9O95484 SNORD109A-201ENST00000459128 67 ntBASIC2.46□□□□□ -2.02
CLDN9O95484 WDR78-207ENST00000488333 613 ntTSL 3 BASIC2.46□□□□□ -2.02
CLDN9O95484 AC034222.1-201ENST00000494052 532 ntBASIC2.46□□□□□ -2.02
CLDN9O95484 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC2.46□□□□□ -2.02
CLDN9O95484 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.46□□□□□ -2.02
CLDN9O95484 MTCYBP43-201ENST00000513621 740 ntBASIC2.46□□□□□ -2.02
CLDN9O95484 RNA5SP216-201ENST00000516111 123 ntBASIC2.46□□□□□ -2.02
CLDN9O95484 RN7SKP40-201ENST00000517211 242 ntBASIC2.46□□□□□ -2.02
CLDN9O95484 HMGB1P41-201ENST00000520234 440 ntBASIC2.46□□□□□ -2.02
CLDN9O95484 AC022634.1-201ENST00000520765 532 ntBASIC2.46□□□□□ -2.02
CLDN9O95484 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC2.46□□□□□ -2.02
CLDN9O95484 SUB1P1-201ENST00000524415 382 ntBASIC2.46□□□□□ -2.02
CLDN9O95484 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC2.46□□□□□ -2.02
CLDN9O95484 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
CLDN9O95484 GLYCAM1-201ENST00000546596 285 ntBASIC2.46□□□□□ -2.02
CLDN9O95484 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC2.46□□□□□ -2.02
CLDN9O95484 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC2.46□□□□□ -2.02
CLDN9O95484 MIR4435-1-201ENST00000582552 80 ntBASIC2.46□□□□□ -2.02
CLDN9O95484 ABBA01006766.1-201ENST00000584728 294 ntBASIC2.46□□□□□ -2.02
CLDN9O95484 AC008498.1-201ENST00000613012 531 ntBASIC2.46□□□□□ -2.02
CLDN9O95484 AC079395.3-201ENST00000615161 484 ntBASIC2.46□□□□□ -2.02
CLDN9O95484 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC2.46□□□□□ -2.02
CLDN9O95484 CCT4P2-201ENST00000233836 1548 ntBASIC2.46□□□□□ -2.02
CLDN9O95484 AC080100.1-201ENST00000624239 5356 ntBASIC2.46□□□□□ -2.02
CLDN9O95484 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC2.46□□□□□ -2.02
CLDN9O95484 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC2.46□□□□□ -2.02
CLDN9O95484 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.46□□□□□ -2.02
CLDN9O95484 MIR449A-201ENST00000362113 91 ntBASIC2.45□□□□□ -2.02
CLDN9O95484 SNORA4.1-201ENST00000364263 144 ntBASIC2.45□□□□□ -2.02
CLDN9O95484 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC2.45□□□□□ -2.02
CLDN9O95484 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.45□□□□□ -2.02
CLDN9O95484 RNU2-52P-201ENST00000410680 190 ntBASIC2.45□□□□□ -2.02
CLDN9O95484 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC2.45□□□□□ -2.02
CLDN9O95484 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC2.45□□□□□ -2.02
CLDN9O95484 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC2.45□□□□□ -2.02
CLDN9O95484 AC098614.2-201ENST00000426040 255 ntBASIC2.45□□□□□ -2.02
CLDN9O95484 AC092427.1-202ENST00000430569 476 ntBASIC2.45□□□□□ -2.02
CLDN9O95484 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC2.45□□□□□ -2.02
CLDN9O95484 TRIM60P8Y-201ENST00000436338 762 ntBASIC2.45□□□□□ -2.02
CLDN9O95484 AP000936.2-201ENST00000447151 681 ntBASIC2.45□□□□□ -2.02
CLDN9O95484 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.45□□□□□ -2.02
CLDN9O95484 RPL26P9-201ENST00000457466 433 ntBASIC2.45□□□□□ -2.02
CLDN9O95484 Y_RNA.638-201ENST00000459374 113 ntBASIC2.45□□□□□ -2.02
CLDN9O95484 MRPS17P3-201ENST00000465453 385 ntBASIC2.45□□□□□ -2.02
CLDN9O95484 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC2.45□□□□□ -2.02
CLDN9O95484 RPL36AP51-201ENST00000487216 318 ntBASIC2.45□□□□□ -2.02
CLDN9O95484 RPS15AP34-201ENST00000487776 387 ntBASIC2.45□□□□□ -2.02
CLDN9O95484 RPS29P20-201ENST00000489592 171 ntBASIC2.45□□□□□ -2.02
CLDN9O95484 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
CLDN9O95484 AC105252.1-201ENST00000503089 286 ntBASIC2.45□□□□□ -2.02
CLDN9O95484 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.45□□□□□ -2.02
CLDN9O95484 MTND5P4-201ENST00000514978 288 ntBASIC2.45□□□□□ -2.02
CLDN9O95484 RNA5SP356-201ENST00000515972 94 ntBASIC2.45□□□□□ -2.02
CLDN9O95484 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.45□□□□□ -2.02
CLDN9O95484 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC2.45□□□□□ -2.02
CLDN9O95484 ATP5F1P5-201ENST00000526403 760 ntBASIC2.45□□□□□ -2.02
CLDN9O95484 OR5BN1P-201ENST00000532955 829 ntBASIC2.45□□□□□ -2.02
CLDN9O95484 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.45□□□□□ -2.02
CLDN9O95484 AC025281.1-201ENST00000567026 265 ntBASIC2.45□□□□□ -2.02
CLDN9O95484 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC2.45□□□□□ -2.02
CLDN9O95484 MIR4319-201ENST00000577285 85 ntBASIC2.45□□□□□ -2.02
CLDN9O95484 AL158042.1-201ENST00000605338 460 ntBASIC2.45□□□□□ -2.02
CLDN9O95484 AC112220.3-201ENST00000605502 502 ntBASIC2.45□□□□□ -2.02
CLDN9O95484 AL391834.2-201ENST00000609982 546 ntBASIC2.45□□□□□ -2.02
CLDN9O95484 FTX_3.1-201ENST00000610451 147 ntBASIC2.45□□□□□ -2.02
CLDN9O95484 AC112204.3-201ENST00000623822 332 ntBASIC2.45□□□□□ -2.02
CLDN9O95484 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.45□□□□□ -2.02
CLDN9O95484 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.45□□□□□ -2.02
CLDN9O95484 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
CLDN9O95484 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.45□□□□□ -2.02
CLDN9O95484 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC2.44□□□□□ -2.02
CLDN9O95484 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.44□□□□□ -2.02
CLDN9O95484 ZNF29P-201ENST00000225587 168 ntBASIC2.44□□□□□ -2.02
CLDN9O95484 RNU6-462P-201ENST00000362659 105 ntBASIC2.44□□□□□ -2.02
CLDN9O95484 RNU6-884P-201ENST00000363889 107 ntBASIC2.44□□□□□ -2.02
CLDN9O95484 DEFA7P-201ENST00000382676 285 ntBASIC2.44□□□□□ -2.02
CLDN9O95484 MIR1261-201ENST00000408659 82 ntBASIC2.44□□□□□ -2.02
CLDN9O95484 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.44□□□□□ -2.02
CLDN9O95484 BTF3L4P3-201ENST00000418879 476 ntBASIC2.44□□□□□ -2.02
CLDN9O95484 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC2.44□□□□□ -2.02
CLDN9O95484 RSU1P2-202ENST00000437884 485 ntBASIC2.44□□□□□ -2.02
CLDN9O95484 RPS15AP7-201ENST00000439294 405 ntBASIC2.44□□□□□ -2.02
CLDN9O95484 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC2.44□□□□□ -2.02
CLDN9O95484 DPPA3P1-201ENST00000448050 469 ntBASIC2.44□□□□□ -2.02
CLDN9O95484 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC2.44□□□□□ -2.02
CLDN9O95484 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC2.44□□□□□ -2.02
CLDN9O95484 USP9YP25-201ENST00000457708 443 ntBASIC2.44□□□□□ -2.02
CLDN9O95484 UBL5P3-201ENST00000475112 231 ntBASIC2.44□□□□□ -2.02
CLDN9O95484 UBE2V1P12-201ENST00000503954 474 ntBASIC2.44□□□□□ -2.02
CLDN9O95484 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC2.44□□□□□ -2.02
CLDN9O95484 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.44□□□□□ -2.02
CLDN9O95484 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.44□□□□□ -2.02
CLDN9O95484 CDC42P4-201ENST00000510507 563 ntBASIC2.44□□□□□ -2.02
CLDN9O95484 AC113155.1-201ENST00000511141 769 ntBASIC2.44□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 96.1 ms