Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC004263.1-201ENST00000479327 332 ntBASIC2.76□□□□□ -1.97
SDC3O75056 AC233702.1-201ENST00000482905 502 ntBASIC2.76□□□□□ -1.97
SDC3O75056 AC135721.1-201ENST00000497954 479 ntBASIC2.76□□□□□ -1.97
SDC3O75056 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC2.76□□□□□ -1.97
SDC3O75056 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC2.76□□□□□ -1.97
SDC3O75056 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC2.76□□□□□ -1.97
SDC3O75056 Y_RNA.717-201ENST00000517106 92 ntBASIC2.76□□□□□ -1.97
SDC3O75056 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.76□□□□□ -1.97
SDC3O75056 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC2.76□□□□□ -1.97
SDC3O75056 AL133271.1-201ENST00000538229 291 ntBASIC2.76□□□□□ -1.97
SDC3O75056 MGST1-215ENST00000540056 546 ntTSL 3 BASIC2.76□□□□□ -1.97
SDC3O75056 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC2.76□□□□□ -1.97
SDC3O75056 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC2.76□□□□□ -1.97
SDC3O75056 AC068135.2-201ENST00000569293 1028 ntBASIC2.76□□□□□ -1.97
SDC3O75056 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC2.76□□□□□ -1.97
SDC3O75056 AL357094.1-201ENST00000603845 844 ntBASIC2.76□□□□□ -1.97
SDC3O75056 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC2.76□□□□□ -1.97
SDC3O75056 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.76□□□□□ -1.97
SDC3O75056 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC2.76□□□□□ -1.97
SDC3O75056 AC068880.5-201ENST00000624331 290 ntBASIC2.76□□□□□ -1.97
SDC3O75056 AC091965.5-201ENST00000624785 342 ntBASIC2.76□□□□□ -1.97
SDC3O75056 AC017037.3-201ENST00000625016 472 ntBASIC2.76□□□□□ -1.97
SDC3O75056 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
SDC3O75056 CCT4P2-201ENST00000233836 1548 ntBASIC2.76□□□□□ -1.97
SDC3O75056 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.76□□□□□ -1.97
SDC3O75056 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
SDC3O75056 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.76□□□□□ -1.97
SDC3O75056 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
SDC3O75056 AL359693.1-201ENST00000614959 2407 ntBASIC2.76□□□□□ -1.97
SDC3O75056 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.75□□□□□ -1.97
SDC3O75056 AC092447.7-201ENST00000422212 1621 ntBASIC2.75□□□□□ -1.97
SDC3O75056 AC010680.1-201ENST00000590024 3590 ntBASIC2.75□□□□□ -1.97
SDC3O75056 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC2.75□□□□□ -1.97
SDC3O75056 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
SDC3O75056 RNU6-500P-201ENST00000362349 107 ntBASIC2.75□□□□□ -1.97
SDC3O75056 RNU6-432P-201ENST00000384196 109 ntBASIC2.75□□□□□ -1.97
SDC3O75056 AL360182.1-201ENST00000397433 468 ntBASIC2.75□□□□□ -1.97
SDC3O75056 AL138827.1-201ENST00000402666 306 ntBASIC2.75□□□□□ -1.97
SDC3O75056 AC099548.1-201ENST00000421443 426 ntBASIC2.75□□□□□ -1.97
SDC3O75056 AC007919.1-201ENST00000429380 217 ntBASIC2.75□□□□□ -1.97
SDC3O75056 LARP1BP3-201ENST00000437229 869 ntBASIC2.75□□□□□ -1.97
SDC3O75056 MTND5P2-201ENST00000442927 1142 ntBASIC2.75□□□□□ -1.97
SDC3O75056 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC2.75□□□□□ -1.97
SDC3O75056 LARP1BP2-201ENST00000486594 519 ntBASIC2.75□□□□□ -1.97
SDC3O75056 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.75□□□□□ -1.97
SDC3O75056 RNU6-56P-201ENST00000516986 93 ntBASIC2.75□□□□□ -1.97
SDC3O75056 MTATP6P15-201ENST00000527233 835 ntBASIC2.75□□□□□ -1.97
SDC3O75056 ZNF321P-202ENST00000550843 495 ntBASIC2.75□□□□□ -1.97
SDC3O75056 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC2.75□□□□□ -1.97
SDC3O75056 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
SDC3O75056 AC005951.2-201ENST00000576282 495 ntBASIC2.75□□□□□ -1.97
SDC3O75056 MIR4435-1-201ENST00000582552 80 ntBASIC2.75□□□□□ -1.97
SDC3O75056 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC2.75□□□□□ -1.97
SDC3O75056 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.75□□□□□ -1.97
SDC3O75056 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC2.75□□□□□ -1.97
SDC3O75056 AC020895.1-201ENST00000595362 272 ntBASIC2.75□□□□□ -1.97
SDC3O75056 RPL23AP78-201ENST00000599928 470 ntBASIC2.75□□□□□ -1.97
SDC3O75056 AC012119.1-201ENST00000603184 222 ntBASIC2.75□□□□□ -1.97
SDC3O75056 AC026790.2-201ENST00000606282 430 ntBASIC2.75□□□□□ -1.97
SDC3O75056 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC2.75□□□□□ -1.97
SDC3O75056 TUG1_2.1-201ENST00000614234 87 ntBASIC2.75□□□□□ -1.97
SDC3O75056 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
SDC3O75056 AC012150.2-201ENST00000621300 544 ntBASIC2.75□□□□□ -1.97
SDC3O75056 VPS8-228ENST00000628962 207 ntTSL 5 BASIC2.75□□□□□ -1.97
SDC3O75056 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC2.75□□□□□ -1.97
SDC3O75056 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC2.75□□□□□ -1.97
SDC3O75056 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.75□□□□□ -1.97
SDC3O75056 MTND4P16-201ENST00000466108 1367 ntBASIC2.74□□□□□ -1.97
SDC3O75056 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.74□□□□□ -1.97
SDC3O75056 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.74□□□□□ -1.97
SDC3O75056 RNU6-859P-201ENST00000362728 107 ntBASIC2.74□□□□□ -1.97
SDC3O75056 RNU1-105P-201ENST00000363470 161 ntBASIC2.74□□□□□ -1.97
SDC3O75056 RNU1-39P-201ENST00000383897 165 ntBASIC2.74□□□□□ -1.97
SDC3O75056 AL593851.1-201ENST00000426171 157 ntBASIC2.74□□□□□ -1.97
SDC3O75056 RPL7P36-201ENST00000444633 681 ntBASIC2.74□□□□□ -1.97
SDC3O75056 CBWD4P-201ENST00000445695 655 ntBASIC2.74□□□□□ -1.97
SDC3O75056 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.74□□□□□ -1.97
SDC3O75056 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC2.74□□□□□ -1.97
SDC3O75056 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC2.74□□□□□ -1.97
SDC3O75056 AC072039.1-201ENST00000477611 581 ntBASIC2.74□□□□□ -1.97
SDC3O75056 MTCYBP35-201ENST00000503630 1137 ntBASIC2.74□□□□□ -1.97
SDC3O75056 AC009901.1-201ENST00000506703 541 ntBASIC2.74□□□□□ -1.97
SDC3O75056 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC2.74□□□□□ -1.97
SDC3O75056 CDC42P4-201ENST00000510507 563 ntBASIC2.74□□□□□ -1.97
SDC3O75056 RNA5SP291-201ENST00000517222 105 ntBASIC2.74□□□□□ -1.97
SDC3O75056 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC2.74□□□□□ -1.97
SDC3O75056 MIR4307-201ENST00000582802 84 ntBASIC2.74□□□□□ -1.97
SDC3O75056 AL139344.1-201ENST00000605228 195 ntBASIC2.74□□□□□ -1.97
SDC3O75056 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.74□□□□□ -1.97
SDC3O75056 AC087683.2-201ENST00000611384 326 ntBASIC2.74□□□□□ -1.97
SDC3O75056 AC140725.3-201ENST00000616193 880 ntBASIC2.74□□□□□ -1.97
SDC3O75056 AC009159.2-201ENST00000617603 606 ntBASIC2.74□□□□□ -1.97
SDC3O75056 AL355493.4-201ENST00000618530 292 ntBASIC2.74□□□□□ -1.97
SDC3O75056 AC007671.2-201ENST00000637344 619 ntBASIC2.74□□□□□ -1.97
SDC3O75056 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.74□□□□□ -1.97
SDC3O75056 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
SDC3O75056 AP000568.1-201ENST00000282964 442 ntBASIC2.73□□□□□ -1.97
SDC3O75056 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
SDC3O75056 MIR19A-201ENST00000384878 82 ntBASIC2.73□□□□□ -1.97
SDC3O75056 TAS2R15P-201ENST00000390674 928 ntBASIC2.73□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 164.7 ms