Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 RPL23AP24-201ENST00000458203 385 ntBASIC5.78□□□□□ -1.48
VPS9D1Q9Y2B5 AC108161.1-201ENST00000461060 402 ntBASIC5.78□□□□□ -1.48
VPS9D1Q9Y2B5 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC5.78□□□□□ -1.48
VPS9D1Q9Y2B5 RN7SL57P-201ENST00000493687 290 ntBASIC5.78□□□□□ -1.48
VPS9D1Q9Y2B5 AC140134.1-201ENST00000511830 3544 ntBASIC5.78□□□□□ -1.48
VPS9D1Q9Y2B5 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC5.78□□□□□ -1.48
VPS9D1Q9Y2B5 RNU6-1007P-201ENST00000516586 107 ntBASIC5.78□□□□□ -1.48
VPS9D1Q9Y2B5 RNU6-762P-201ENST00000517107 102 ntBASIC5.78□□□□□ -1.48
VPS9D1Q9Y2B5 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC5.78□□□□□ -1.48
VPS9D1Q9Y2B5 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
VPS9D1Q9Y2B5 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC5.78□□□□□ -1.48
VPS9D1Q9Y2B5 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC5.78□□□□□ -1.48
VPS9D1Q9Y2B5 CR381572.2-201ENST00000624852 397 ntBASIC5.78□□□□□ -1.48
VPS9D1Q9Y2B5 PCBP1-AS1-360ENST00000630377 598 ntTSL 5 BASIC5.78□□□□□ -1.48
VPS9D1Q9Y2B5 ZNF702P-202ENST00000434269 1966 ntBASIC5.78□□□□□ -1.48
VPS9D1Q9Y2B5 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
VPS9D1Q9Y2B5 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
VPS9D1Q9Y2B5 AC232271.1-201ENST00000602455 2715 ntBASIC5.77□□□□□ -1.49
VPS9D1Q9Y2B5 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC5.77□□□□□ -1.49
VPS9D1Q9Y2B5 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
VPS9D1Q9Y2B5 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC5.77□□□□□ -1.49
VPS9D1Q9Y2B5 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC5.77□□□□□ -1.49
VPS9D1Q9Y2B5 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC5.77□□□□□ -1.49
VPS9D1Q9Y2B5 AC134026.1-201ENST00000623249 2239 ntBASIC5.77□□□□□ -1.49
VPS9D1Q9Y2B5 RN7SKP15-201ENST00000364742 309 ntBASIC5.77□□□□□ -1.49
VPS9D1Q9Y2B5 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC5.77□□□□□ -1.49
VPS9D1Q9Y2B5 RNU6-768P-201ENST00000384683 107 ntBASIC5.77□□□□□ -1.49
VPS9D1Q9Y2B5 AL513331.1-201ENST00000411908 397 ntBASIC5.77□□□□□ -1.49
VPS9D1Q9Y2B5 REREP1Y-201ENST00000422655 198 ntBASIC5.77□□□□□ -1.49
VPS9D1Q9Y2B5 AC007679.3-201ENST00000434035 414 ntBASIC5.77□□□□□ -1.49
VPS9D1Q9Y2B5 REREP2Y-201ENST00000439103 200 ntBASIC5.77□□□□□ -1.49
VPS9D1Q9Y2B5 AL161636.2-201ENST00000445179 927 ntBASIC5.77□□□□□ -1.49
VPS9D1Q9Y2B5 HSPE1P13-201ENST00000451143 297 ntBASIC5.77□□□□□ -1.49
VPS9D1Q9Y2B5 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC5.77□□□□□ -1.49
VPS9D1Q9Y2B5 AC004129.2-201ENST00000457229 287 ntBASIC5.77□□□□□ -1.49
VPS9D1Q9Y2B5 RPS23P2-201ENST00000463671 415 ntBASIC5.77□□□□□ -1.49
VPS9D1Q9Y2B5 SNRPCP3-201ENST00000474888 476 ntBASIC5.77□□□□□ -1.49
VPS9D1Q9Y2B5 AC020593.1-201ENST00000507399 299 ntBASIC5.77□□□□□ -1.49
VPS9D1Q9Y2B5 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
VPS9D1Q9Y2B5 EIF4A2P5-201ENST00000529914 499 ntBASIC5.77□□□□□ -1.49
VPS9D1Q9Y2B5 TOMM20P1-201ENST00000534518 427 ntBASIC5.77□□□□□ -1.49
VPS9D1Q9Y2B5 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.77□□□□□ -1.49
VPS9D1Q9Y2B5 AC126615.2-201ENST00000553003 515 ntBASIC5.77□□□□□ -1.49
VPS9D1Q9Y2B5 CYCSP38-201ENST00000559840 322 ntBASIC5.77□□□□□ -1.49
VPS9D1Q9Y2B5 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC5.77□□□□□ -1.49
VPS9D1Q9Y2B5 AC069307.1-201ENST00000602820 447 ntBASIC5.77□□□□□ -1.49
VPS9D1Q9Y2B5 AC087783.2-201ENST00000605070 562 ntBASIC5.77□□□□□ -1.49
VPS9D1Q9Y2B5 AL078604.3-201ENST00000615580 211 ntBASIC5.77□□□□□ -1.49
VPS9D1Q9Y2B5 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC5.77□□□□□ -1.49
VPS9D1Q9Y2B5 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC5.77□□□□□ -1.49
VPS9D1Q9Y2B5 AC000095.2-202ENST00000637415 154 ntBASIC5.77□□□□□ -1.49
VPS9D1Q9Y2B5 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
VPS9D1Q9Y2B5 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
VPS9D1Q9Y2B5 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.77□□□□□ -1.49
VPS9D1Q9Y2B5 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC5.77□□□□□ -1.49
VPS9D1Q9Y2B5 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC5.77□□□□□ -1.49
VPS9D1Q9Y2B5 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 AL596211.1-201ENST00000569873 2277 ntBASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 RNY1P11-201ENST00000363759 113 ntBASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 RNU11-201ENST00000387069 134 ntBASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 RNA5SP91-201ENST00000390902 119 ntBASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 AL591034.1-201ENST00000407447 340 ntBASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 RPL12P11-201ENST00000439970 501 ntBASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 AL353748.1-201ENST00000440753 474 ntBASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 BX276092.4-201ENST00000452056 248 ntBASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 RPL12P39-201ENST00000455456 496 ntBASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 RPL32P33-201ENST00000487023 394 ntBASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 AC146944.2-203ENST00000502493 354 ntBASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 AC139495.1-202ENST00000513164 354 ntBASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 RNU6-1198P-201ENST00000516904 67 ntBASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 RNU6-58P-201ENST00000517143 103 ntBASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 AL360012.1-201ENST00000602813 131 ntBASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 AL391813.1-201ENST00000603098 260 ntBASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 AL161798.1-201ENST00000604630 131 ntBASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 AL138963.2-201ENST00000605137 226 ntBASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 AC007390.2-201ENST00000606229 3803 ntBASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 AC004467.1-201ENST00000615678 330 ntBASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 MIR6861-201ENST00000618657 64 ntBASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 AP002799.1-201ENST00000623552 423 ntBASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 UGP2-230ENST00000626380 276 ntTSL 5 BASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 AC079776.5-201ENST00000641920 211 ntBASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 MFSD8-239ENST00000641590 2479 ntBASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 AC009962.1-201ENST00000567327 3813 ntBASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
VPS9D1Q9Y2B5 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms