Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AC024082.2-201ENST00000434771 238 ntBASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 CYCSP43-201ENST00000438233 310 ntBASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 RPS29P7-201ENST00000439662 171 ntBASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 MTND5P20-201ENST00000448677 143 ntBASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 MRPS17P3-201ENST00000465453 385 ntBASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 AC010285.1-201ENST00000470580 392 ntBASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 HMGB1P22-201ENST00000505315 124 ntBASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 RNA5SP401-201ENST00000515920 127 ntBASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 SNORA20.3-201ENST00000516880 132 ntBASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 RNU6-840P-201ENST00000517275 65 ntBASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 ERHP1-201ENST00000523006 310 ntBASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 HIF1AP1-201ENST00000553642 175 ntBASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 HSPE1P5-201ENST00000561489 272 ntBASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 FAM60BP-201ENST00000578364 658 ntBASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 MIR5685-201ENST00000579080 79 ntBASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 MIR4775-201ENST00000581168 75 ntBASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 U6.114-201ENST00000636407 96 ntBASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 ATM-228ENST00000639240 498 ntTSL 5 BASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 ATM-230ENST00000640388 578 ntTSL 5 BASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 MFSD8-236ENST00000641509 4050 ntBASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 SDAD1P2-201ENST00000441308 2028 ntBASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 AC004972.1-201ENST00000623934 2209 ntBASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 RNU6-451P-201ENST00000362921 107 ntBASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 SNORA7.2-201ENST00000364446 145 ntBASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 AL354719.1-201ENST00000406535 843 ntBASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 DUTP6-201ENST00000425573 462 ntBASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 USP9YP7-201ENST00000436723 430 ntBASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 MTND1P18-201ENST00000448191 573 ntBASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 USP9YP32-201ENST00000452432 430 ntBASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 RN7SL132P-201ENST00000478131 296 ntBASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 GMPSP1-201ENST00000514075 579 ntBASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 SNORA31.22-201ENST00000517204 135 ntBASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 NRON-201ENST00000517270 370 ntBASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 RANP9-201ENST00000519957 271 ntBASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 AC109635.4-202ENST00000531666 412 ntBASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 ARL6IP1P1-201ENST00000545836 610 ntBASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 TGIF1P1-201ENST00000558095 802 ntBASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 RPL23AP84-201ENST00000571193 464 ntBASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 SDR42E1P2-201ENST00000614861 481 ntBASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 AC010133.1-201ENST00000615809 842 ntBASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 AL360181.4-201ENST00000621752 134 ntBASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
LIMCH1Q9UPQ0 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
LIMCH1Q9UPQ0 U8.11-201ENST00000384699 133 ntBASIC4.19□□□□□ -1.74
LIMCH1Q9UPQ0 U8.12-201ENST00000384701 133 ntBASIC4.19□□□□□ -1.74
LIMCH1Q9UPQ0 MIR184-201ENST00000384962 84 ntBASIC4.19□□□□□ -1.74
LIMCH1Q9UPQ0 RNU2-29P-201ENST00000410423 189 ntBASIC4.19□□□□□ -1.74
LIMCH1Q9UPQ0 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC4.19□□□□□ -1.74
LIMCH1Q9UPQ0 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC4.19□□□□□ -1.74
LIMCH1Q9UPQ0 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC4.19□□□□□ -1.74
LIMCH1Q9UPQ0 AC092017.2-201ENST00000427600 362 ntBASIC4.19□□□□□ -1.74
LIMCH1Q9UPQ0 AC004975.1-201ENST00000428733 208 ntBASIC4.19□□□□□ -1.74
LIMCH1Q9UPQ0 RPL21P112-201ENST00000434403 463 ntBASIC4.19□□□□□ -1.74
LIMCH1Q9UPQ0 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC4.19□□□□□ -1.74
LIMCH1Q9UPQ0 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC4.19□□□□□ -1.74
LIMCH1Q9UPQ0 GAPDHP27-201ENST00000447427 1020 ntBASIC4.19□□□□□ -1.74
LIMCH1Q9UPQ0 AC073415.1-201ENST00000449240 153 ntBASIC4.19□□□□□ -1.74
LIMCH1Q9UPQ0 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC4.19□□□□□ -1.74
LIMCH1Q9UPQ0 CACYBPP2-201ENST00000453625 678 ntBASIC4.19□□□□□ -1.74
LIMCH1Q9UPQ0 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC4.19□□□□□ -1.74
LIMCH1Q9UPQ0 U8.18-201ENST00000459285 133 ntBASIC4.19□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms