Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AL592148.1-201ENST00000413568 445 ntBASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 RPL21P24-201ENST00000413752 448 ntBASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 AC092427.1-202ENST00000430569 476 ntBASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 USP12PX-201ENST00000432383 1057 ntBASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 TRIM60P8Y-201ENST00000436338 762 ntBASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 Z80107.1-201ENST00000436830 412 ntBASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 MTCO2P20-201ENST00000437339 673 ntBASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 AL117351.1-201ENST00000438864 766 ntBASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 RN7SL75P-201ENST00000461926 281 ntBASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 RPL36AP51-201ENST00000487216 318 ntBASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 LTV1P1-201ENST00000510683 1237 ntBASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 MTND5P13-201ENST00000513046 1079 ntBASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 MTND5P4-201ENST00000514978 288 ntBASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 RNA5SP385-201ENST00000515947 110 ntBASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 MEG8-218ENST00000556720 456 ntTSL 3 BASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 OR1M4P-201ENST00000589199 287 ntBASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 AL391001.1-201ENST00000602747 715 ntBASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 AC239868.4-201ENST00000608318 671 ntBASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 AP000484.1-201ENST00000620067 1252 ntBASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 PSMD5-AS1-215ENST00000640622 205 ntBASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 ELF2P3-201ENST00000445099 1506 ntBASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 AC093831.2-201ENST00000624393 3427 ntBASIC2.86□□□□□ -1.95
HDDC3Q8N4P3 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC2.86□□□□□ -1.95
HDDC3Q8N4P3 MIR888-201ENST00000401186 77 ntBASIC2.86□□□□□ -1.95
HDDC3Q8N4P3 RPL19P1-201ENST00000411635 428 ntBASIC2.86□□□□□ -1.95
HDDC3Q8N4P3 MTCO2P23-201ENST00000425216 680 ntBASIC2.86□□□□□ -1.95
HDDC3Q8N4P3 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC2.86□□□□□ -1.95
HDDC3Q8N4P3 TXNL1P1-201ENST00000429528 554 ntBASIC2.86□□□□□ -1.95
HDDC3Q8N4P3 RPS15AP5-201ENST00000436276 388 ntBASIC2.86□□□□□ -1.95
HDDC3Q8N4P3 AL513043.1-201ENST00000439124 535 ntBASIC2.86□□□□□ -1.95
HDDC3Q8N4P3 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC2.86□□□□□ -1.95
HDDC3Q8N4P3 UBL5P3-201ENST00000475112 231 ntBASIC2.86□□□□□ -1.95
HDDC3Q8N4P3 AC106872.3-201ENST00000495104 446 ntBASIC2.86□□□□□ -1.95
HDDC3Q8N4P3 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC2.86□□□□□ -1.95
HDDC3Q8N4P3 RN7SKP43-201ENST00000516173 320 ntBASIC2.86□□□□□ -1.95
HDDC3Q8N4P3 COX6CP5-201ENST00000527162 228 ntBASIC2.86□□□□□ -1.95
HDDC3Q8N4P3 GLYCAM1-201ENST00000546596 285 ntBASIC2.86□□□□□ -1.95
HDDC3Q8N4P3 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC2.86□□□□□ -1.95
HDDC3Q8N4P3 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC2.86□□□□□ -1.95
HDDC3Q8N4P3 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.86□□□□□ -1.95
HDDC3Q8N4P3 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
HDDC3Q8N4P3 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC2.86□□□□□ -1.95
HDDC3Q8N4P3 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.86□□□□□ -1.95
HDDC3Q8N4P3 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC2.86□□□□□ -1.95
HDDC3Q8N4P3 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC2.86□□□□□ -1.95
HDDC3Q8N4P3 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC2.86□□□□□ -1.95
HDDC3Q8N4P3 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.86□□□□□ -1.95
HDDC3Q8N4P3 AC013470.4-201ENST00000619978 986 ntBASIC2.86□□□□□ -1.95
HDDC3Q8N4P3 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC2.86□□□□□ -1.95
HDDC3Q8N4P3 PCF11-AS1-201ENST00000602322 1516 ntBASIC2.86□□□□□ -1.95
HDDC3Q8N4P3 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
HDDC3Q8N4P3 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
HDDC3Q8N4P3 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.86□□□□□ -1.95
HDDC3Q8N4P3 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
HDDC3Q8N4P3 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
HDDC3Q8N4P3 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
HDDC3Q8N4P3 SNORA51.4-201ENST00000364993 124 ntBASIC2.85□□□□□ -1.95
HDDC3Q8N4P3 U8.9-201ENST00000365667 134 ntBASIC2.85□□□□□ -1.95
HDDC3Q8N4P3 SET-203ENST00000372688 801 ntTSL 2 BASIC2.85□□□□□ -1.95
HDDC3Q8N4P3 SNORA70B-201ENST00000384210 135 ntBASIC2.85□□□□□ -1.95
HDDC3Q8N4P3 AL356057.2-201ENST00000403318 432 ntBASIC2.85□□□□□ -1.95
HDDC3Q8N4P3 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
HDDC3Q8N4P3 NPM1P11-201ENST00000417106 855 ntBASIC2.85□□□□□ -1.95
HDDC3Q8N4P3 ARL5AP4-201ENST00000430731 512 ntBASIC2.85□□□□□ -1.95
HDDC3Q8N4P3 AC084290.1-201ENST00000434995 374 ntBASIC2.85□□□□□ -1.95
HDDC3Q8N4P3 RSU1P2-202ENST00000437884 485 ntBASIC2.85□□□□□ -1.95
HDDC3Q8N4P3 ELOCP30-201ENST00000447108 299 ntBASIC2.85□□□□□ -1.95
HDDC3Q8N4P3 OR6K1P-201ENST00000456766 971 ntBASIC2.85□□□□□ -1.95
HDDC3Q8N4P3 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC2.85□□□□□ -1.95
HDDC3Q8N4P3 RPL37P6-201ENST00000460682 294 ntBASIC2.85□□□□□ -1.95
HDDC3Q8N4P3 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC2.85□□□□□ -1.95
HDDC3Q8N4P3 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC2.85□□□□□ -1.95
HDDC3Q8N4P3 AC007536.1-201ENST00000533382 349 ntBASIC2.85□□□□□ -1.95
HDDC3Q8N4P3 VBP1-203ENST00000535916 944 ntTSL 2 BASIC2.85□□□□□ -1.95
HDDC3Q8N4P3 AL133153.1-201ENST00000557756 303 ntBASIC2.85□□□□□ -1.95
HDDC3Q8N4P3 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.85□□□□□ -1.95
HDDC3Q8N4P3 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC2.85□□□□□ -1.95
HDDC3Q8N4P3 MTCO2P2-201ENST00000591258 225 ntBASIC2.85□□□□□ -1.95
HDDC3Q8N4P3 AC072039.2-201ENST00000608883 439 ntBASIC2.85□□□□□ -1.95
HDDC3Q8N4P3 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC2.85□□□□□ -1.95
HDDC3Q8N4P3 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC2.85□□□□□ -1.95
HDDC3Q8N4P3 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 135.5 ms