Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.24□□□□□ -1.73
USP39Q53GS9 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
USP39Q53GS9 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC4.24□□□□□ -1.73
USP39Q53GS9 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
USP39Q53GS9 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
USP39Q53GS9 MTND5P19-201ENST00000424872 1794 ntBASIC4.24□□□□□ -1.73
USP39Q53GS9 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.24□□□□□ -1.73
USP39Q53GS9 TAB3P1-202ENST00000452645 1634 ntBASIC4.24□□□□□ -1.73
USP39Q53GS9 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.24□□□□□ -1.73
USP39Q53GS9 NOL8P1-201ENST00000508336 3529 ntBASIC4.24□□□□□ -1.73
USP39Q53GS9 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
USP39Q53GS9 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
USP39Q53GS9 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
USP39Q53GS9 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC4.23□□□□□ -1.73
USP39Q53GS9 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
USP39Q53GS9 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
USP39Q53GS9 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
USP39Q53GS9 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
USP39Q53GS9 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
USP39Q53GS9 Y_RNA.47-201ENST00000362697 108 ntBASIC4.23□□□□□ -1.73
USP39Q53GS9 SNORA62.1-201ENST00000364287 154 ntBASIC4.23□□□□□ -1.73
USP39Q53GS9 SNORA70.4-201ENST00000365509 134 ntBASIC4.23□□□□□ -1.73
USP39Q53GS9 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC4.23□□□□□ -1.73
USP39Q53GS9 AC117470.1-201ENST00000381974 330 ntBASIC4.23□□□□□ -1.73
USP39Q53GS9 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
USP39Q53GS9 SNORA11.1-201ENST00000408133 129 ntBASIC4.23□□□□□ -1.73
USP39Q53GS9 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC4.23□□□□□ -1.73
USP39Q53GS9 HMGB3P2-201ENST00000411913 584 ntBASIC4.23□□□□□ -1.73
USP39Q53GS9 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.23□□□□□ -1.73
USP39Q53GS9 SKA2P1-201ENST00000425592 390 ntBASIC4.23□□□□□ -1.73
USP39Q53GS9 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.23□□□□□ -1.73
USP39Q53GS9 FTH1P1-201ENST00000437933 532 ntBASIC4.23□□□□□ -1.73
USP39Q53GS9 HMGB1P15-201ENST00000453854 435 ntBASIC4.23□□□□□ -1.73
USP39Q53GS9 RNU7-182P-201ENST00000459009 62 ntBASIC4.23□□□□□ -1.73
USP39Q53GS9 Y_RNA.653-201ENST00000459091 95 ntBASIC4.23□□□□□ -1.73
USP39Q53GS9 RPL7P43-201ENST00000478876 753 ntBASIC4.23□□□□□ -1.73
USP39Q53GS9 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC4.23□□□□□ -1.73
USP39Q53GS9 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC4.23□□□□□ -1.73
USP39Q53GS9 AC017037.2-201ENST00000513850 890 ntBASIC4.23□□□□□ -1.73
USP39Q53GS9 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC4.23□□□□□ -1.73
USP39Q53GS9 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC4.23□□□□□ -1.73
USP39Q53GS9 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4.23□□□□□ -1.73
USP39Q53GS9 RPL21P12-201ENST00000559810 515 ntBASIC4.23□□□□□ -1.73
USP39Q53GS9 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC4.23□□□□□ -1.73
USP39Q53GS9 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC4.23□□□□□ -1.73
USP39Q53GS9 HSPE1P5-201ENST00000561489 272 ntBASIC4.23□□□□□ -1.73
USP39Q53GS9 AC124068.1-201ENST00000563131 678 ntBASIC4.23□□□□□ -1.73
USP39Q53GS9 MIR4703-201ENST00000577728 79 ntBASIC4.23□□□□□ -1.73
USP39Q53GS9 AF038458.1-201ENST00000588406 262 ntBASIC4.23□□□□□ -1.73
USP39Q53GS9 AC073539.2-201ENST00000597113 165 ntBASIC4.23□□□□□ -1.73
USP39Q53GS9 AC113194.1-201ENST00000606037 500 ntBASIC4.23□□□□□ -1.73
USP39Q53GS9 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC4.23□□□□□ -1.73
USP39Q53GS9 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
USP39Q53GS9 CYP3A51P-201ENST00000633513 256 ntBASIC4.23□□□□□ -1.73
USP39Q53GS9 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.23□□□□□ -1.73
USP39Q53GS9 AC090337.1-201ENST00000579651 2074 ntBASIC4.23□□□□□ -1.73
USP39Q53GS9 AC011460.1-201ENST00000636268 1834 ntBASIC4.23□□□□□ -1.73
USP39Q53GS9 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
USP39Q53GS9 AC121333.1-201ENST00000567488 2709 ntBASIC4.23□□□□□ -1.73
USP39Q53GS9 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
USP39Q53GS9 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
USP39Q53GS9 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.22□□□□□ -1.73
USP39Q53GS9 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC4.22□□□□□ -1.73
USP39Q53GS9 AC009902.3-201ENST00000606235 2172 ntBASIC4.22□□□□□ -1.73
USP39Q53GS9 RNU6-1115P-201ENST00000362490 106 ntBASIC4.22□□□□□ -1.73
USP39Q53GS9 RNU6-1032P-201ENST00000384100 107 ntBASIC4.22□□□□□ -1.73
USP39Q53GS9 RNU6-1029P-201ENST00000384109 107 ntBASIC4.22□□□□□ -1.73
USP39Q53GS9 RNU6-1222P-201ENST00000384615 107 ntBASIC4.22□□□□□ -1.73
USP39Q53GS9 U3.20-201ENST00000390909 217 ntBASIC4.22□□□□□ -1.73
USP39Q53GS9 AL590704.1-201ENST00000402856 794 ntBASIC4.22□□□□□ -1.73
USP39Q53GS9 PVALB-202ENST00000404171 422 ntTSL 2 BASIC4.22□□□□□ -1.73
USP39Q53GS9 RNU2-29P-201ENST00000410423 189 ntBASIC4.22□□□□□ -1.73
USP39Q53GS9 Y_RNA.618-201ENST00000410949 107 ntBASIC4.22□□□□□ -1.73
USP39Q53GS9 ARL5AP1-201ENST00000418991 388 ntBASIC4.22□□□□□ -1.73
USP39Q53GS9 CYP4F29P-201ENST00000420685 446 ntBASIC4.22□□□□□ -1.73
USP39Q53GS9 AC018865.2-201ENST00000423631 129 ntBASIC4.22□□□□□ -1.73
USP39Q53GS9 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
USP39Q53GS9 MED13P1-201ENST00000428342 171 ntBASIC4.22□□□□□ -1.73
USP39Q53GS9 HLA-N-201ENST00000437516 135 ntBASIC4.22□□□□□ -1.73
USP39Q53GS9 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC4.22□□□□□ -1.73
USP39Q53GS9 AL035666.1-201ENST00000446195 348 ntBASIC4.22□□□□□ -1.73
USP39Q53GS9 PPIAP3-201ENST00000450588 505 ntBASIC4.22□□□□□ -1.73
USP39Q53GS9 AL583843.1-201ENST00000456070 346 ntBASIC4.22□□□□□ -1.73
USP39Q53GS9 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC4.22□□□□□ -1.73
USP39Q53GS9 RNA5SP246-201ENST00000458909 119 ntBASIC4.22□□□□□ -1.73
USP39Q53GS9 RPL23AP2-201ENST00000471227 466 ntBASIC4.22□□□□□ -1.73
USP39Q53GS9 AC110792.1-201ENST00000491826 472 ntBASIC4.22□□□□□ -1.73
USP39Q53GS9 TRBVA-201ENST00000498804 316 ntBASIC4.22□□□□□ -1.73
USP39Q53GS9 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC4.22□□□□□ -1.73
USP39Q53GS9 Vault.1-201ENST00000516474 102 ntBASIC4.22□□□□□ -1.73
USP39Q53GS9 RNA5SP454-201ENST00000517231 127 ntBASIC4.22□□□□□ -1.73
USP39Q53GS9 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC4.22□□□□□ -1.73
USP39Q53GS9 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC4.22□□□□□ -1.73
USP39Q53GS9 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.22□□□□□ -1.73
USP39Q53GS9 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC4.22□□□□□ -1.73
USP39Q53GS9 MIR5583-1-201ENST00000580941 59 ntBASIC4.22□□□□□ -1.73
USP39Q53GS9 RNA5SP108-201ENST00000605921 117 ntBASIC4.22□□□□□ -1.73
USP39Q53GS9 AC245517.5-201ENST00000611529 162 ntBASIC4.22□□□□□ -1.73
USP39Q53GS9 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.22□□□□□ -1.73
USP39Q53GS9 AC098657.3-201ENST00000620434 263 ntBASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 108.6 ms