Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
RNF4P78317 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.47□□□□□ -1.69
RNF4P78317 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
RNF4P78317 RHOT1P2-201ENST00000366423 333 ntBASIC4.47□□□□□ -1.69
RNF4P78317 Y_RNA.424-201ENST00000384063 103 ntBASIC4.47□□□□□ -1.69
RNF4P78317 Y_RNA.476-201ENST00000384347 108 ntBASIC4.47□□□□□ -1.69
RNF4P78317 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
RNF4P78317 LAP3P1-201ENST00000403648 294 ntBASIC4.47□□□□□ -1.69
RNF4P78317 RNU6-325P-201ENST00000411132 105 ntBASIC4.47□□□□□ -1.69
RNF4P78317 RN7SKP100-201ENST00000411258 284 ntBASIC4.47□□□□□ -1.69
RNF4P78317 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC4.47□□□□□ -1.69
RNF4P78317 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC4.47□□□□□ -1.69
RNF4P78317 AL353621.1-201ENST00000418219 243 ntBASIC4.47□□□□□ -1.69
RNF4P78317 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC4.47□□□□□ -1.69
RNF4P78317 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC4.47□□□□□ -1.69
RNF4P78317 RPS17P8-201ENST00000434525 335 ntBASIC4.47□□□□□ -1.69
RNF4P78317 RPL21P2-201ENST00000440049 481 ntBASIC4.47□□□□□ -1.69
RNF4P78317 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC4.47□□□□□ -1.69
RNF4P78317 AC022493.1-201ENST00000492984 337 ntBASIC4.47□□□□□ -1.69
RNF4P78317 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC4.47□□□□□ -1.69
RNF4P78317 AC008716.1-201ENST00000511084 513 ntBASIC4.47□□□□□ -1.69
RNF4P78317 RNA5SP497-201ENST00000516081 97 ntBASIC4.47□□□□□ -1.69
RNF4P78317 RNU6-1315P-201ENST00000517187 99 ntBASIC4.47□□□□□ -1.69
RNF4P78317 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.47□□□□□ -1.69
RNF4P78317 AC133555.2-201ENST00000550213 292 ntBASIC4.47□□□□□ -1.69
RNF4P78317 SUB1P3-201ENST00000564581 315 ntBASIC4.47□□□□□ -1.69
RNF4P78317 AC022968.1-201ENST00000567372 442 ntBASIC4.47□□□□□ -1.69
RNF4P78317 AC091042.1-201ENST00000579213 173 ntBASIC4.47□□□□□ -1.69
RNF4P78317 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC4.47□□□□□ -1.69
RNF4P78317 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC4.47□□□□□ -1.69
RNF4P78317 AC073869.10-201ENST00000642016 354 ntBASIC4.47□□□□□ -1.69
RNF4P78317 SCN1A-220ENST00000641603 12506 ntBASIC4.47□□□□□ -1.69
RNF4P78317 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
RNF4P78317 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
RNF4P78317 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.47□□□□□ -1.69
RNF4P78317 AL139811.1-201ENST00000424779 2299 ntBASIC4.47□□□□□ -1.69
RNF4P78317 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.46□□□□□ -1.69
RNF4P78317 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
RNF4P78317 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
RNF4P78317 Z73965.1-201ENST00000623412 2297 ntBASIC4.46□□□□□ -1.7
RNF4P78317 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
RNF4P78317 Y_RNA.126-201ENST00000363382 111 ntBASIC4.46□□□□□ -1.7
RNF4P78317 MIR514A1-201ENST00000385133 98 ntBASIC4.46□□□□□ -1.7
RNF4P78317 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC4.46□□□□□ -1.7
RNF4P78317 AC091390.3-201ENST00000426478 338 ntBASIC4.46□□□□□ -1.7
RNF4P78317 USP9YP16-201ENST00000430287 407 ntBASIC4.46□□□□□ -1.7
RNF4P78317 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC4.46□□□□□ -1.7
RNF4P78317 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC4.46□□□□□ -1.7
RNF4P78317 CHEK2P4-201ENST00000450340 246 ntBASIC4.46□□□□□ -1.7
RNF4P78317 CECR9-201ENST00000453421 199 ntBASIC4.46□□□□□ -1.7
RNF4P78317 USP9YP23-201ENST00000455085 407 ntBASIC4.46□□□□□ -1.7
RNF4P78317 RPL23AP31-201ENST00000456160 467 ntBASIC4.46□□□□□ -1.7
RNF4P78317 RPL7AP28-201ENST00000464513 571 ntBASIC4.46□□□□□ -1.7
RNF4P78317 AC022447.4-201ENST00000504053 364 ntBASIC4.46□□□□□ -1.7
RNF4P78317 MTND4LP22-201ENST00000508209 276 ntBASIC4.46□□□□□ -1.7
RNF4P78317 ENPP7P9-201ENST00000514456 627 ntBASIC4.46□□□□□ -1.7
RNF4P78317 RNU6-475P-201ENST00000516073 104 ntBASIC4.46□□□□□ -1.7
RNF4P78317 RN7SKP276-201ENST00000516242 268 ntBASIC4.46□□□□□ -1.7
RNF4P78317 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
RNF4P78317 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC4.46□□□□□ -1.7
RNF4P78317 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.46□□□□□ -1.7
RNF4P78317 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.46□□□□□ -1.7
RNF4P78317 MIR5699-201ENST00000578903 90 ntBASIC4.46□□□□□ -1.7
RNF4P78317 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC4.46□□□□□ -1.7
RNF4P78317 AC068790.4-201ENST00000602474 263 ntBASIC4.46□□□□□ -1.7
RNF4P78317 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC4.46□□□□□ -1.7
RNF4P78317 AL121917.1-203ENST00000605534 577 ntBASIC4.46□□□□□ -1.7
RNF4P78317 AC011373.1-201ENST00000607270 237 ntBASIC4.46□□□□□ -1.7
RNF4P78317 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC4.46□□□□□ -1.7
RNF4P78317 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.7
RNF4P78317 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC4.46□□□□□ -1.7
RNF4P78317 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
RNF4P78317 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC4.46□□□□□ -1.7
RNF4P78317 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
RNF4P78317 EOGT-210ENST00000615922 1931 ntBASIC4.46□□□□□ -1.7
RNF4P78317 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
RNF4P78317 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.46□□□□□ -1.7
RNF4P78317 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.45□□□□□ -1.7
RNF4P78317 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
RNF4P78317 AC100778.3-201ENST00000580060 1750 ntBASIC4.45□□□□□ -1.7
RNF4P78317 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
RNF4P78317 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.45□□□□□ -1.7
RNF4P78317 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.45□□□□□ -1.7
RNF4P78317 RNA5SP52-201ENST00000362448 134 ntBASIC4.45□□□□□ -1.7
RNF4P78317 Y_RNA.106-201ENST00000363189 100 ntBASIC4.45□□□□□ -1.7
RNF4P78317 RNY3P11-201ENST00000364153 102 ntBASIC4.45□□□□□ -1.7
RNF4P78317 RNU6-173P-201ENST00000364215 104 ntBASIC4.45□□□□□ -1.7
RNF4P78317 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
RNF4P78317 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
RNF4P78317 RNU6-1109P-201ENST00000391187 107 ntBASIC4.45□□□□□ -1.7
RNF4P78317 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC4.45□□□□□ -1.7
RNF4P78317 DAP3P1-201ENST00000441522 278 ntBASIC4.45□□□□□ -1.7
RNF4P78317 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.45□□□□□ -1.7
RNF4P78317 PCNPP5-201ENST00000452246 481 ntBASIC4.45□□□□□ -1.7
RNF4P78317 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC4.45□□□□□ -1.7
RNF4P78317 AC133473.1-201ENST00000455173 299 ntBASIC4.45□□□□□ -1.7
RNF4P78317 RPS23P3-201ENST00000470993 430 ntBASIC4.45□□□□□ -1.7
RNF4P78317 FO393415.2-201ENST00000480085 343 ntBASIC4.45□□□□□ -1.7
RNF4P78317 RPS23P1-201ENST00000491662 432 ntBASIC4.45□□□□□ -1.7
RNF4P78317 AC110792.1-201ENST00000491826 472 ntBASIC4.45□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 85.3 ms