Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC2.94□□□□□ -1.94
SOX3P41225 DUXAP4-201ENST00000603046 613 ntBASIC2.94□□□□□ -1.94
SOX3P41225 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
SOX3P41225 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC2.94□□□□□ -1.94
SOX3P41225 AL451064.1-201ENST00000607718 471 ntBASIC2.94□□□□□ -1.94
SOX3P41225 AC109347.2-201ENST00000610220 349 ntBASIC2.94□□□□□ -1.94
SOX3P41225 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC2.94□□□□□ -1.94
SOX3P41225 uc_338.25-201ENST00000613756 156 ntBASIC2.94□□□□□ -1.94
SOX3P41225 AC004696.1-201ENST00000614345 607 ntBASIC2.94□□□□□ -1.94
SOX3P41225 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC2.94□□□□□ -1.94
SOX3P41225 AC095031.1-201ENST00000623685 672 ntBASIC2.94□□□□□ -1.94
SOX3P41225 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC2.94□□□□□ -1.94
SOX3P41225 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC2.94□□□□□ -1.94
SOX3P41225 PAPPA-AS1-201ENST00000445861 2450 ntBASIC2.94□□□□□ -1.94
SOX3P41225 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC2.94□□□□□ -1.94
SOX3P41225 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
SOX3P41225 AC008264.2-201ENST00000610193 3731 ntBASIC2.93□□□□□ -1.94
SOX3P41225 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC2.93□□□□□ -1.94
SOX3P41225 DEFB109C-201ENST00000382575 264 ntBASIC2.93□□□□□ -1.94
SOX3P41225 DEFB109B-201ENST00000382656 264 ntBASIC2.93□□□□□ -1.94
SOX3P41225 SNORA46-201ENST00000384762 135 ntBASIC2.93□□□□□ -1.94
SOX3P41225 RPL23AP32-201ENST00000395315 459 ntBASIC2.93□□□□□ -1.94
SOX3P41225 OFD1P1Y-201ENST00000411756 1225 ntBASIC2.93□□□□□ -1.94
SOX3P41225 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC2.93□□□□□ -1.94
SOX3P41225 AC019097.1-201ENST00000424783 735 ntBASIC2.93□□□□□ -1.94
SOX3P41225 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
SOX3P41225 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC2.93□□□□□ -1.94
SOX3P41225 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC2.93□□□□□ -1.94
SOX3P41225 SETP5-201ENST00000437270 562 ntBASIC2.93□□□□□ -1.94
SOX3P41225 AC093156.1-201ENST00000440382 670 ntBASIC2.93□□□□□ -1.94
SOX3P41225 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC2.93□□□□□ -1.94
SOX3P41225 MTCO3P45-201ENST00000443036 613 ntBASIC2.93□□□□□ -1.94
SOX3P41225 AL671855.1-201ENST00000446875 1203 ntBASIC2.93□□□□□ -1.94
SOX3P41225 HMGN2P16-201ENST00000456802 261 ntBASIC2.93□□□□□ -1.94
SOX3P41225 AC006445.1-201ENST00000491925 405 ntBASIC2.93□□□□□ -1.94
SOX3P41225 AC010587.1-201ENST00000505809 469 ntBASIC2.93□□□□□ -1.94
SOX3P41225 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
SOX3P41225 LEF1-218ENST00000512172 598 ntTSL 2 BASIC2.93□□□□□ -1.94
SOX3P41225 SNORA18.6-201ENST00000516792 115 ntBASIC2.93□□□□□ -1.94
SOX3P41225 RNU6-64P-201ENST00000517119 105 ntBASIC2.93□□□□□ -1.94
SOX3P41225 AC100870.1-201ENST00000522035 505 ntBASIC2.93□□□□□ -1.94
SOX3P41225 OR4H12P-201ENST00000556269 907 ntBASIC2.93□□□□□ -1.94
SOX3P41225 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC2.93□□□□□ -1.94
SOX3P41225 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC2.93□□□□□ -1.94
SOX3P41225 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC2.93□□□□□ -1.94
SOX3P41225 MIR3921-201ENST00000577308 85 ntBASIC2.93□□□□□ -1.94
SOX3P41225 MIR4293-201ENST00000584305 78 ntBASIC2.93□□□□□ -1.94
SOX3P41225 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC2.93□□□□□ -1.94
SOX3P41225 AC079089.3-201ENST00000603094 673 ntBASIC2.93□□□□□ -1.94
SOX3P41225 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC2.93□□□□□ -1.94
SOX3P41225 AC090425.2-201ENST00000608818 501 ntBASIC2.93□□□□□ -1.94
SOX3P41225 AC006566.1-201ENST00000608943 513 ntBASIC2.93□□□□□ -1.94
SOX3P41225 AP000254.1-201ENST00000609934 520 ntBASIC2.93□□□□□ -1.94
SOX3P41225 AC103710.1-201ENST00000610003 901 ntBASIC2.93□□□□□ -1.94
SOX3P41225 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC2.93□□□□□ -1.94
SOX3P41225 HULC.1-201ENST00000612720 240 ntBASIC2.93□□□□□ -1.94
SOX3P41225 AC018692.3-201ENST00000623929 123 ntBASIC2.93□□□□□ -1.94
SOX3P41225 AL136313.1-201ENST00000624804 202 ntBASIC2.93□□□□□ -1.94
SOX3P41225 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC2.93□□□□□ -1.94
SOX3P41225 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC2.93□□□□□ -1.94
SOX3P41225 HSP90AA4P-202ENST00000506915 2228 ntBASIC2.93□□□□□ -1.94
SOX3P41225 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC2.93□□□□□ -1.94
SOX3P41225 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC2.93□□□□□ -1.94
SOX3P41225 AL672296.1-201ENST00000427780 2158 ntBASIC2.93□□□□□ -1.94
SOX3P41225 AC093908.1-201ENST00000623125 8092 ntBASIC2.92□□□□□ -1.94
SOX3P41225 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC2.92□□□□□ -1.94
SOX3P41225 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
SOX3P41225 OR1S2-201ENST00000302592 978 ntBASIC2.92□□□□□ -1.94
SOX3P41225 RNY4P34-201ENST00000364779 95 ntBASIC2.92□□□□□ -1.94
SOX3P41225 OR5H15-201ENST00000383696 930 ntBASIC2.92□□□□□ -1.94
SOX3P41225 Y_RNA.559-201ENST00000384686 107 ntBASIC2.92□□□□□ -1.94
SOX3P41225 SNORA48.8-201ENST00000391324 134 ntBASIC2.92□□□□□ -1.94
SOX3P41225 AC110754.1-201ENST00000399740 601 ntBASIC2.92□□□□□ -1.94
SOX3P41225 TXNP7-201ENST00000406296 293 ntBASIC2.92□□□□□ -1.94
SOX3P41225 ERMN-204ENST00000409925 556 ntTSL 4 BASIC2.92□□□□□ -1.94
SOX3P41225 RPL21P24-201ENST00000413752 448 ntBASIC2.92□□□□□ -1.94
SOX3P41225 ELOCP17-201ENST00000414751 326 ntBASIC2.92□□□□□ -1.94
SOX3P41225 MTCO3P41-201ENST00000414801 328 ntBASIC2.92□□□□□ -1.94
SOX3P41225 TRAPPC2P4-201ENST00000421750 331 ntBASIC2.92□□□□□ -1.94
SOX3P41225 AC018630.2-202ENST00000422992 927 ntBASIC2.92□□□□□ -1.94
SOX3P41225 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC2.92□□□□□ -1.94
SOX3P41225 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC2.92□□□□□ -1.94
SOX3P41225 AC244505.4-201ENST00000434905 287 ntBASIC2.92□□□□□ -1.94
SOX3P41225 USP9YP15-201ENST00000442391 422 ntBASIC2.92□□□□□ -1.94
SOX3P41225 SSXP5-201ENST00000443473 287 ntBASIC2.92□□□□□ -1.94
SOX3P41225 AC016696.1-201ENST00000446949 318 ntBASIC2.92□□□□□ -1.94
SOX3P41225 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC2.92□□□□□ -1.94
SOX3P41225 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC2.92□□□□□ -1.94
SOX3P41225 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC2.92□□□□□ -1.94
SOX3P41225 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC2.92□□□□□ -1.94
SOX3P41225 AC082651.2-201ENST00000496833 166 ntBASIC2.92□□□□□ -1.94
SOX3P41225 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC2.92□□□□□ -1.94
SOX3P41225 CDC42P4-201ENST00000510507 563 ntBASIC2.92□□□□□ -1.94
SOX3P41225 Y_RNA.655-201ENST00000515919 96 ntBASIC2.92□□□□□ -1.94
SOX3P41225 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC2.92□□□□□ -1.94
SOX3P41225 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC2.92□□□□□ -1.94
SOX3P41225 AC123904.3-201ENST00000547218 814 ntBASIC2.92□□□□□ -1.94
SOX3P41225 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC2.92□□□□□ -1.94
SOX3P41225 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC2.92□□□□□ -1.94
SOX3P41225 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC2.92□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 94 ms