Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 POLR2KP2-201ENST00000438155 177 ntBASIC4.74□□□□□ -1.65
COL8A1P27658 AC016700.2-201ENST00000446011 156 ntBASIC4.74□□□□□ -1.65
COL8A1P27658 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC4.74□□□□□ -1.65
COL8A1P27658 GAPDHP25-201ENST00000447061 1001 ntBASIC4.74□□□□□ -1.65
COL8A1P27658 snoU13.7-201ENST00000459220 104 ntBASIC4.74□□□□□ -1.65
COL8A1P27658 SCARNA16.4-201ENST00000516956 187 ntBASIC4.74□□□□□ -1.65
COL8A1P27658 RN7SKP258-201ENST00000517151 304 ntBASIC4.74□□□□□ -1.65
COL8A1P27658 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.74□□□□□ -1.65
COL8A1P27658 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC4.74□□□□□ -1.65
COL8A1P27658 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC4.74□□□□□ -1.65
COL8A1P27658 AP005403.1-201ENST00000579720 229 ntBASIC4.74□□□□□ -1.65
COL8A1P27658 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC4.74□□□□□ -1.65
COL8A1P27658 BPIFA4P-203ENST00000603168 689 ntBASIC4.74□□□□□ -1.65
COL8A1P27658 AC004825.2-201ENST00000616634 455 ntBASIC4.74□□□□□ -1.65
COL8A1P27658 AC000095.2-202ENST00000637415 154 ntBASIC4.74□□□□□ -1.65
COL8A1P27658 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
COL8A1P27658 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL8A1P27658 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC4.74□□□□□ -1.65
COL8A1P27658 PROS2P-201ENST00000474651 1951 ntBASIC4.74□□□□□ -1.65
COL8A1P27658 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
COL8A1P27658 CTTNBP2NL-201ENST00000271277 5897 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL8A1P27658 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
COL8A1P27658 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
COL8A1P27658 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL8A1P27658 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL8A1P27658 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC4.74□□□□□ -1.65
COL8A1P27658 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC4.74□□□□□ -1.65
COL8A1P27658 AC110491.1-201ENST00000562191 2010 ntBASIC4.73□□□□□ -1.65
COL8A1P27658 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC4.73□□□□□ -1.65
COL8A1P27658 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
COL8A1P27658 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL8A1P27658 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC4.73□□□□□ -1.65
COL8A1P27658 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC4.73□□□□□ -1.65
COL8A1P27658 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC4.73□□□□□ -1.65
COL8A1P27658 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
COL8A1P27658 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC4.73□□□□□ -1.65
COL8A1P27658 SNURFL-201ENST00000309296 343 ntBASIC4.73□□□□□ -1.65
COL8A1P27658 U8.7-201ENST00000364940 136 ntBASIC4.73□□□□□ -1.65
COL8A1P27658 RNU6-827P-201ENST00000365553 106 ntBASIC4.73□□□□□ -1.65
COL8A1P27658 RNU6-1179P-201ENST00000384667 107 ntBASIC4.73□□□□□ -1.65
COL8A1P27658 Y_RNA.570-201ENST00000384750 101 ntBASIC4.73□□□□□ -1.65
COL8A1P27658 RPS4XP3-201ENST00000398541 413 ntBASIC4.73□□□□□ -1.65
COL8A1P27658 AC099677.1-201ENST00000420575 175 ntBASIC4.73□□□□□ -1.65
COL8A1P27658 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC4.73□□□□□ -1.65
COL8A1P27658 RANP8-201ENST00000444720 713 ntBASIC4.73□□□□□ -1.65
COL8A1P27658 IFNA11P-201ENST00000446352 526 ntBASIC4.73□□□□□ -1.65
COL8A1P27658 MRPS10P1-201ENST00000448483 130 ntBASIC4.73□□□□□ -1.65
COL8A1P27658 AC073264.2-201ENST00000448886 166 ntBASIC4.73□□□□□ -1.65
COL8A1P27658 AL162739.1-201ENST00000450606 307 ntBASIC4.73□□□□□ -1.65
COL8A1P27658 AC117440.1-201ENST00000474107 571 ntBASIC4.73□□□□□ -1.65
COL8A1P27658 RNU1-86P-201ENST00000516108 154 ntBASIC4.73□□□□□ -1.65
COL8A1P27658 RN7SKP179-201ENST00000516126 217 ntBASIC4.73□□□□□ -1.65
COL8A1P27658 MIR892C-201ENST00000516410 77 ntBASIC4.73□□□□□ -1.65
COL8A1P27658 RNU1-107P-201ENST00000516617 154 ntBASIC4.73□□□□□ -1.65
COL8A1P27658 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC4.73□□□□□ -1.65
COL8A1P27658 AC021006.3-201ENST00000530771 192 ntBASIC4.73□□□□□ -1.65
COL8A1P27658 AC008033.2-201ENST00000542626 177 ntBASIC4.73□□□□□ -1.65
COL8A1P27658 CR383656.7-201ENST00000548164 174 ntBASIC4.73□□□□□ -1.65
COL8A1P27658 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC4.73□□□□□ -1.65
COL8A1P27658 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC4.73□□□□□ -1.65
COL8A1P27658 AC011447.4-201ENST00000587562 111 ntBASIC4.73□□□□□ -1.65
COL8A1P27658 MIR132-201ENST00000591554 101 ntBASIC4.73□□□□□ -1.65
COL8A1P27658 RPL23AP88-201ENST00000605759 454 ntBASIC4.73□□□□□ -1.65
COL8A1P27658 MIR6130-201ENST00000619419 109 ntBASIC4.73□□□□□ -1.65
COL8A1P27658 MVP-219ENST00000629059 120 ntTSL 5 BASIC4.73□□□□□ -1.65
COL8A1P27658 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC4.73□□□□□ -1.65
COL8A1P27658 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC4.73□□□□□ -1.65
COL8A1P27658 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC4.73□□□□□ -1.65
COL8A1P27658 AC093671.1-201ENST00000624981 2929 ntBASIC4.73□□□□□ -1.65
COL8A1P27658 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
COL8A1P27658 AC144833.1-201ENST00000567953 4089 ntBASIC4.73□□□□□ -1.65
COL8A1P27658 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC4.73□□□□□ -1.65
COL8A1P27658 AC140134.1-201ENST00000511830 3544 ntBASIC4.73□□□□□ -1.65
COL8A1P27658 AC092070.2-203ENST00000598377 3644 ntBASIC4.73□□□□□ -1.65
COL8A1P27658 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
COL8A1P27658 MFSD8-216ENST00000641147 4009 ntBASIC4.73□□□□□ -1.65
COL8A1P27658 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
COL8A1P27658 AL731532.2-201ENST00000623542 1953 ntBASIC4.73□□□□□ -1.65
COL8A1P27658 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC4.73□□□□□ -1.65
COL8A1P27658 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
COL8A1P27658 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC4.72□□□□□ -1.65
COL8A1P27658 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC4.72□□□□□ -1.65
COL8A1P27658 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC4.72□□□□□ -1.65
COL8A1P27658 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
COL8A1P27658 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
COL8A1P27658 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC4.72□□□□□ -1.65
COL8A1P27658 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
COL8A1P27658 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
COL8A1P27658 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
COL8A1P27658 GNAS-202ENST00000306090 477 ntTSL 5 BASIC4.72□□□□□ -1.65
COL8A1P27658 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
COL8A1P27658 RNVU1-3-201ENST00000364313 161 ntBASIC4.72□□□□□ -1.65
COL8A1P27658 SNORA22-201ENST00000383907 134 ntBASIC4.72□□□□□ -1.65
COL8A1P27658 Y_RNA.420-201ENST00000384043 110 ntBASIC4.72□□□□□ -1.65
COL8A1P27658 RNU6-211P-201ENST00000384047 107 ntBASIC4.72□□□□□ -1.65
COL8A1P27658 RNU6-318P-201ENST00000384283 103 ntBASIC4.72□□□□□ -1.65
COL8A1P27658 Y_RNA.534-201ENST00000384599 112 ntBASIC4.72□□□□□ -1.65
COL8A1P27658 RNU2-50P-201ENST00000410494 143 ntBASIC4.72□□□□□ -1.65
COL8A1P27658 CYP4F29P-201ENST00000420685 446 ntBASIC4.72□□□□□ -1.65
COL8A1P27658 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC4.72□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 97.4 ms