Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC073308.1-201ENST00000623696 305 ntBASIC3.57□□□□□ -1.84
HOXC11O43248 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
HOXC11O43248 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.57□□□□□ -1.84
HOXC11O43248 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
HOXC11O43248 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
HOXC11O43248 AC073343.1-201ENST00000328239 651 ntBASIC3.56□□□□□ -1.84
HOXC11O43248 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
HOXC11O43248 Y_RNA.245-201ENST00000364493 95 ntBASIC3.56□□□□□ -1.84
HOXC11O43248 RNU6-1035P-201ENST00000384477 107 ntBASIC3.56□□□□□ -1.84
HOXC11O43248 AC017079.2-201ENST00000416102 485 ntBASIC3.56□□□□□ -1.84
HOXC11O43248 AC092047.1-201ENST00000424997 240 ntBASIC3.56□□□□□ -1.84
HOXC11O43248 ZNF863P-201ENST00000426746 417 ntBASIC3.56□□□□□ -1.84
HOXC11O43248 RPL23AP82-202ENST00000427528 469 ntBASIC3.56□□□□□ -1.84
HOXC11O43248 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC3.56□□□□□ -1.84
HOXC11O43248 RPS24P1-201ENST00000438550 371 ntBASIC3.56□□□□□ -1.84
HOXC11O43248 MTND4P25-201ENST00000441039 533 ntBASIC3.56□□□□□ -1.84
HOXC11O43248 BNIP3P2-201ENST00000441221 577 ntBASIC3.56□□□□□ -1.84
HOXC11O43248 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC3.56□□□□□ -1.84
HOXC11O43248 MTND1P29-201ENST00000448112 647 ntBASIC3.56□□□□□ -1.84
HOXC11O43248 RNU6-953P-201ENST00000459154 107 ntBASIC3.56□□□□□ -1.84
HOXC11O43248 RAP1BP2-201ENST00000478270 544 ntBASIC3.56□□□□□ -1.84
HOXC11O43248 AL135752.1-201ENST00000479477 471 ntBASIC3.56□□□□□ -1.84
HOXC11O43248 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC3.56□□□□□ -1.84
HOXC11O43248 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.56□□□□□ -1.84
HOXC11O43248 RNU6-928P-201ENST00000516876 104 ntBASIC3.56□□□□□ -1.84
HOXC11O43248 IGKV2-26-201ENST00000518305 343 ntBASIC3.56□□□□□ -1.84
HOXC11O43248 HMGB1P41-201ENST00000520234 440 ntBASIC3.56□□□□□ -1.84
HOXC11O43248 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC3.56□□□□□ -1.84
HOXC11O43248 AP006587.4-201ENST00000526053 529 ntBASIC3.56□□□□□ -1.84
HOXC11O43248 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC3.56□□□□□ -1.84
HOXC11O43248 AP000867.2-201ENST00000532468 320 ntBASIC3.56□□□□□ -1.84
HOXC11O43248 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC3.56□□□□□ -1.84
HOXC11O43248 MIR3611-201ENST00000584484 83 ntBASIC3.56□□□□□ -1.84
HOXC11O43248 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC3.56□□□□□ -1.84
HOXC11O43248 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.56□□□□□ -1.84
HOXC11O43248 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
HOXC11O43248 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.56□□□□□ -1.84
HOXC11O43248 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
HOXC11O43248 AC233263.6-201ENST00000631132 1963 ntBASIC3.56□□□□□ -1.84
HOXC11O43248 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC3.56□□□□□ -1.84
HOXC11O43248 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
HOXC11O43248 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HOXC11O43248 RNU6-1167P-201ENST00000363227 94 ntBASIC3.55□□□□□ -1.84
HOXC11O43248 RNU6-525P-201ENST00000363685 104 ntBASIC3.55□□□□□ -1.84
HOXC11O43248 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
HOXC11O43248 U3.19-201ENST00000390893 196 ntBASIC3.55□□□□□ -1.84
HOXC11O43248 ERMN-204ENST00000409925 556 ntTSL 4 BASIC3.55□□□□□ -1.84
HOXC11O43248 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXC11O43248 BX295541.1-201ENST00000417774 250 ntBASIC3.55□□□□□ -1.84
HOXC11O43248 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXC11O43248 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC3.55□□□□□ -1.84
HOXC11O43248 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXC11O43248 AC006989.1-201ENST00000427212 131 ntBASIC3.55□□□□□ -1.84
HOXC11O43248 OR2AS1P-201ENST00000427827 319 ntBASIC3.55□□□□□ -1.84
HOXC11O43248 HMGB3P11-201ENST00000440127 604 ntBASIC3.55□□□□□ -1.84
HOXC11O43248 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXC11O43248 AC092798.1-201ENST00000458542 409 ntBASIC3.55□□□□□ -1.84
HOXC11O43248 KLF3P2-201ENST00000465138 268 ntBASIC3.55□□□□□ -1.84
HOXC11O43248 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC3.55□□□□□ -1.84
HOXC11O43248 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC3.55□□□□□ -1.84
HOXC11O43248 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC3.55□□□□□ -1.84
HOXC11O43248 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
HOXC11O43248 RN7SKP83-201ENST00000516512 178 ntBASIC3.55□□□□□ -1.84
HOXC11O43248 AC022616.3-201ENST00000523940 148 ntBASIC3.55□□□□□ -1.84
HOXC11O43248 AC037471.2-201ENST00000564941 598 ntBASIC3.55□□□□□ -1.84
HOXC11O43248 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXC11O43248 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXC11O43248 AC104763.2-201ENST00000604179 382 ntBASIC3.55□□□□□ -1.84
HOXC11O43248 MIR98-201ENST00000606724 119 ntBASIC3.55□□□□□ -1.84
HOXC11O43248 AC107294.1-201ENST00000609524 467 ntBASIC3.55□□□□□ -1.84
HOXC11O43248 AC008498.1-201ENST00000613012 531 ntBASIC3.55□□□□□ -1.84
HOXC11O43248 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXC11O43248 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXC11O43248 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HOXC11O43248 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.55□□□□□ -1.84
HOXC11O43248 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXC11O43248 AL079305.1-201ENST00000623159 3008 ntBASIC3.55□□□□□ -1.84
HOXC11O43248 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HOXC11O43248 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC3.54□□□□□ -1.84
HOXC11O43248 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.54□□□□□ -1.84
HOXC11O43248 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
HOXC11O43248 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.54□□□□□ -1.84
HOXC11O43248 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
HOXC11O43248 RNU6-960P-201ENST00000364056 120 ntBASIC3.54□□□□□ -1.84
HOXC11O43248 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC3.54□□□□□ -1.84
HOXC11O43248 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
HOXC11O43248 SNORA75-201ENST00000384158 137 ntBASIC3.54□□□□□ -1.84
HOXC11O43248 RNU6-140P-201ENST00000384566 108 ntBASIC3.54□□□□□ -1.84
HOXC11O43248 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC3.54□□□□□ -1.84
HOXC11O43248 AC007899.1-201ENST00000412776 775 ntBASIC3.54□□□□□ -1.84
HOXC11O43248 BTF3L4P1-201ENST00000413813 468 ntBASIC3.54□□□□□ -1.84
HOXC11O43248 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.54□□□□□ -1.84
HOXC11O43248 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC3.54□□□□□ -1.84
HOXC11O43248 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC3.54□□□□□ -1.84
HOXC11O43248 RPS29P31-201ENST00000446147 164 ntBASIC3.54□□□□□ -1.84
HOXC11O43248 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC3.54□□□□□ -1.84
HOXC11O43248 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC3.54□□□□□ -1.84
HOXC11O43248 RPL21P13-201ENST00000488305 481 ntBASIC3.54□□□□□ -1.84
HOXC11O43248 FCF1P8-201ENST00000510322 597 ntBASIC3.54□□□□□ -1.84
HOXC11O43248 RN7SKP298-201ENST00000515950 94 ntBASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 92.2 ms